Analysis of interatomic Contacts of Structural Units in PDB entry:
6NT2

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6NT2 entry

There are 4 chains in PDB entry 6NT2 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 42	ARG 371
D	PRO 42	ARG 371
B	PRO 42	ARG 371
C	PRO 42	LEU 236

There are 56 helices in PDB entry 6NT2. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	43	47	Right-handed 310
Helix 2	AA2	A	48	53	Right-handed alpha
Helix 3	AA3	A	55	58	Right-handed 310
Helix 4	AA4	A	59	69	Right-handed alpha
Helix 5	AA5	A	69	82	Right-handed alpha
Helix 6	AA6	A	83	88	Right-handed alpha
Helix 7	AA7	A	100	109	Right-handed alpha
Helix 8	AA8	A	122	133	Right-handed alpha
Helix 9	AA9	A	145	149	Right-handed 310
Helix 10	AB1	A	173	184	Right-handed alpha
Helix 11	AB2	A	205	213	Right-handed alpha
Helix 12	AB3	A	214	218	Right-handed 310
Helix 13	AB4	A	224	232	Right-handed alpha
Helix 14	AB5	A	241	245	Right-handed 310
Helix 15	AB6	A	261	266	Right-handed 310
Helix 16	AB7	D	43	47	Right-handed 310
Helix 17	AB8	D	50	55	Right-handed alpha
Helix 18	AB9	D	56	58	Right-handed 310
Helix 19	AC1	D	59	69	Right-handed alpha
Helix 20	AC2	D	69	82	Right-handed alpha
Helix 21	AC3	D	83	88	Right-handed alpha
Helix 22	AC4	D	100	109	Right-handed alpha
Helix 23	AC5	D	122	133	Right-handed alpha
Helix 24	AC6	D	173	184	Right-handed alpha
Helix 25	AC7	D	205	213	Right-handed alpha
Helix 26	AC8	D	214	218	Right-handed 310
Helix 27	AC9	D	224	232	Right-handed alpha
Helix 28	AD1	D	241	245	Right-handed 310
Helix 29	AD2	D	261	266	Right-handed 310
Helix 30	AD3	B	43	47	Right-handed 310
Helix 31	AD4	B	48	55	Right-handed alpha
Helix 32	AD5	B	56	58	Right-handed 310
Helix 33	AD6	B	59	69	Right-handed alpha
Helix 34	AD7	B	69	82	Right-handed alpha
Helix 35	AD8	B	83	88	Right-handed alpha
Helix 36	AD9	B	100	109	Right-handed alpha
Helix 37	AE1	B	122	133	Right-handed alpha
Helix 38	AE2	B	173	184	Right-handed alpha
Helix 39	AE3	B	205	213	Right-handed alpha
Helix 40	AE4	B	214	218	Right-handed 310
Helix 41	AE5	B	224	232	Right-handed alpha
Helix 42	AE6	B	241	245	Right-handed 310
Helix 43	AE7	B	261	266	Right-handed 310
Helix 44	AE8	C	43	47	Right-handed 310
Helix 45	AE9	C	55	58	Right-handed 310
Helix 46	AF1	C	59	69	Right-handed alpha
Helix 47	AF2	C	69	82	Right-handed alpha
Helix 48	AF3	C	83	88	Right-handed alpha
Helix 49	AF4	C	100	109	Right-handed alpha
Helix 50	AF5	C	122	133	Right-handed alpha
Helix 51	AF6	C	173	184	Right-handed alpha
Helix 52	AF7	C	205	213	Right-handed alpha
Helix 53	AF8	C	214	218	Right-handed 310
Helix 54	AF9	C	224	232	Right-handed alpha
Helix 55	AG1	C	241	245	Right-handed 310
Helix 56	AG2	C	261	266	Right-handed 310

There are 16 sheets in PDB entry 6NT2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	139	143	first strand
Strand 2	A	113	118	parallel
Strand 3	A	91	95	parallel
Strand 4	A	156	160	parallel
Strand 5	A	185	192	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	236	238	first strand
Strand 2	A	314	325	anti-parallel
Strand 3	A	279	291	anti-parallel
Strand 4	A	195	203	anti-parallel
Strand 5	A	250	256	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	236	238	first strand
Strand 2	A	314	325	anti-parallel
Strand 3	A	279	291	anti-parallel
Strand 4	A	300	302	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	267	274	first strand
Strand 2	A	330	339	anti-parallel
Strand 3	A	347	356	anti-parallel
Strand 4	A	361	370	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	139	143	first strand
Strand 2	D	113	118	parallel
Strand 3	D	91	95	parallel
Strand 4	D	156	160	parallel
Strand 5	D	185	192	parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	236	238	first strand
Strand 2	D	314	325	anti-parallel
Strand 3	D	279	291	anti-parallel
Strand 4	D	195	203	anti-parallel
Strand 5	D	250	256	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	236	238	first strand
Strand 2	D	314	325	anti-parallel
Strand 3	D	279	291	anti-parallel
Strand 4	D	300	302	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	267	274	first strand
Strand 2	D	330	339	anti-parallel
Strand 3	D	347	356	anti-parallel
Strand 4	D	361	370	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	139	143	first strand
Strand 2	B	113	118	parallel
Strand 3	B	91	95	parallel
Strand 4	B	156	160	parallel
Strand 5	B	185	192	parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	236	238	first strand
Strand 2	B	314	325	anti-parallel
Strand 3	B	279	291	anti-parallel
Strand 4	B	195	203	anti-parallel
Strand 5	B	250	256	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	236	238	first strand
Strand 2	B	314	325	anti-parallel
Strand 3	B	279	291	anti-parallel
Strand 4	B	300	302	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	267	274	first strand
Strand 2	B	330	339	anti-parallel
Strand 3	B	347	356	anti-parallel
Strand 4	B	361	370	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	139	143	first strand
Strand 2	C	113	118	parallel
Strand 3	C	91	95	parallel
Strand 4	C	156	160	parallel
Strand 5	C	185	192	parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	236	238	first strand
Strand 2	C	314	325	anti-parallel
Strand 3	C	279	291	anti-parallel
Strand 4	C	195	203	anti-parallel
Strand 5	C	250	256	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	236	238	first strand
Strand 2	C	314	325	anti-parallel
Strand 3	C	279	291	anti-parallel
Strand 4	C	300	302	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	267	274	first strand
Strand 2	C	330	339	anti-parallel
Strand 3	C	347	356	anti-parallel
Strand 4	C	361	370	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6NT2

Analysis of interatomic Contacts of Structural Units in PDB entry:
6NT2