Analysis of interatomic Contacts of Structural Units in PDB entry:
6NT4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6NT4 entry

There are 3 chains in PDB entry 6NT4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 52GLY 1505
B
 VAL 1HIS 64
C
 VAL 1HIS 64
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 68 helices in PDB entry 6NT4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
53 58Right-handed alpha
Helix 2
AA2
A
100 110Right-handed alpha
Helix 3
AA3
A
129 138Right-handed alpha
Helix 4
AA4
A
139 158Right-handed alpha
Helix 5
AA5
A
165 188Right-handed alpha
Helix 6
AA6
A
191 197Right-handed alpha
Helix 7
AA7
A
199 215Right-handed alpha
Helix 8
AA8
A
227 240Right-handed 310
Helix 9
AA9
A
244 276Right-handed alpha
Helix 10
AB1
A
304 311Right-handed alpha
Helix 11
AB2
A
351 355Right-handed 310
Helix 12
AB3
A
360 373Right-handed alpha
Helix 13
AB4
A
376 389Right-handed alpha
Helix 14
AB5
A
392 402Right-handed alpha
Helix 15
AB6
A
403 433Right-handed alpha
Helix 16
AB7
A
503 517Right-handed alpha
Helix 17
AB8
A
521 537Right-handed alpha
Helix 18
AB9
A
544 573Right-handed alpha
Helix 19
AC1
A
577 582Right-handed 310
Helix 20
AC2
A
583 604Right-handed alpha
Helix 21
AC3
A
608 614Right-handed alpha
Helix 22
AC4
A
615 623Right-handed 310
Helix 23
AC5
A
624 637Right-handed alpha
Helix 24
AC6
A
638 663Right-handed alpha
Helix 25
AC7
A
665 670Right-handed alpha
Helix 26
AC8
A
686 700Right-handed alpha
Helix 27
AC9
A
702 712Right-handed alpha
Helix 28
AD1
A
717 730Right-handed alpha
Helix 29
AD2
A
731 741Right-handed alpha
Helix 30
AD3
A
838 853Right-handed alpha
Helix 31
AD4
A
855 871Right-handed alpha
Helix 32
AD5
A
872 874Right-handed 310
Helix 33
AD6
A
885 913Right-handed alpha
Helix 34
AD7
A
913 918Right-handed alpha
Helix 35
AD8
A
922 943Right-handed alpha
Helix 36
AD9
A
947 951Right-handed 310
Helix 37
AE1
A
954 957Right-handed 310
Helix 38
AE2
A
958 963Right-handed alpha
Helix 39
AE3
A
964 967Right-handed 310
Helix 40
AE4
A
968 1004Right-handed alpha
Helix 41
AE5
A
1026 1033Right-handed alpha
Helix 42
AE6
A
1047 1059Right-handed alpha
Helix 43
AE7
A
1063 1073Right-handed alpha
Helix 44
AE8
A
1088 1101Right-handed alpha
Helix 45
AE9
A
1103 1107Right-handed 310
Helix 46
AF1
A
1108 1124Right-handed alpha
Helix 47
AF2
A
1132 1141Right-handed alpha
Helix 48
AF3
A
1142 1145Right-handed 310
Helix 49
AF4
A
1159 1165Right-handed alpha
Helix 50
AF5
A
1169 1174Right-handed alpha
Helix 51
AF6
A
1176 1186Right-handed alpha
Helix 52
AF7
A
1187 1190Right-handed 310
Helix 53
AF8
A
1197 1224Right-handed alpha
Helix 54
AF9
A
1231 1247Right-handed alpha
Helix 55
AG1
A
1260 1278Right-handed 310
Helix 56
AG2
A
1290 1295Right-handed alpha
Helix 57
AG3
A
1295 1321Right-handed alpha
Helix 58
AG4
A
1339 1350Right-handed alpha
Helix 59
AG5
A
1354 1363Right-handed alpha
Helix 60
AG6
A
1384 1390Right-handed alpha
Helix 61
AG7
A
1393 1398Right-handed alpha
Helix 62
AG8
A
1401 1424Right-handed alpha
Helix 63
AG9
A
1426 1440Right-handed alpha
Helix 64
AH1
A
1450 1457Right-handed 310
Helix 65
AH2
A
1472 1477Right-handed alpha
Helix 66
AH3
A
1488 1504Right-handed alpha
Helix 67
AH4
B
18 28Right-handed alpha
Helix 68
AH5
C
19 28Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 6NT4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
287 290first strand
Strand 2
A
341 344anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
34 37first strand
Strand 2
B
45 48anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
2 4first strand
Strand 2
C
45 51anti-parallel
Strand 3
C
33 37anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il