Analysis of interatomic Contacts of Structural Units in PDB entry:
6NT8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6NT8 entry

There are 4 chains in PDB entry 6NT8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 11GLN 342
B
 PRO 11GLN 342
D
 PRO 11GLN 342
E
 PRO 11GLN 342
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 56 helices in PDB entry 6NT8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
23 41Right-handed alpha
Helix 2
AA2
A
49 76Right-handed alpha
Helix 3
AA3
A
78 83Right-handed alpha
Helix 4
AA4
A
88 95Right-handed alpha
Helix 5
AA5
A
99 108Right-handed alpha
Helix 6
AA6
A
127 140Right-handed alpha
Helix 7
AA7
A
145 156Right-handed alpha
Helix 8
AA8
A
159 172Right-handed alpha
Helix 9
AA9
A
172 177Right-handed alpha
Helix 10
AB1
A
179 189Right-handed alpha
Helix 11
AB2
A
197 201Right-handed 310
Helix 12
AB3
A
269 276Right-handed alpha
Helix 13
AB4
A
285 306Right-handed alpha
Helix 14
AB5
A
329 341Right-handed alpha
Helix 15
AB6
B
23 41Right-handed alpha
Helix 16
AB7
B
49 76Right-handed alpha
Helix 17
AB8
B
78 83Right-handed alpha
Helix 18
AB9
B
88 95Right-handed alpha
Helix 19
AC1
B
99 108Right-handed alpha
Helix 20
AC2
B
127 140Right-handed alpha
Helix 21
AC3
B
145 156Right-handed alpha
Helix 22
AC4
B
159 172Right-handed alpha
Helix 23
AC5
B
172 177Right-handed alpha
Helix 24
AC6
B
179 189Right-handed alpha
Helix 25
AC7
B
197 201Right-handed 310
Helix 26
AC8
B
269 276Right-handed alpha
Helix 27
AC9
B
285 306Right-handed alpha
Helix 28
AD1
B
329 341Right-handed alpha
Helix 29
AD2
D
23 41Right-handed alpha
Helix 30
AD3
D
49 76Right-handed alpha
Helix 31
AD4
D
78 83Right-handed alpha
Helix 32
AD5
D
88 95Right-handed alpha
Helix 33
AD6
D
99 108Right-handed alpha
Helix 34
AD7
D
127 140Right-handed alpha
Helix 35
AD8
D
145 156Right-handed alpha
Helix 36
AD9
D
159 172Right-handed alpha
Helix 37
AE1
D
172 177Right-handed alpha
Helix 38
AE2
D
179 189Right-handed alpha
Helix 39
AE3
D
197 201Right-handed 310
Helix 40
AE4
D
269 276Right-handed alpha
Helix 41
AE5
D
285 306Right-handed alpha
Helix 42
AE6
D
329 341Right-handed alpha
Helix 43
AE7
E
23 41Right-handed alpha
Helix 44
AE8
E
49 76Right-handed alpha
Helix 45
AE9
E
78 83Right-handed alpha
Helix 46
AF1
E
88 95Right-handed alpha
Helix 47
AF2
E
99 108Right-handed alpha
Helix 48
AF3
E
127 140Right-handed alpha
Helix 49
AF4
E
145 156Right-handed alpha
Helix 50
AF5
E
159 172Right-handed alpha
Helix 51
AF6
E
172 177Right-handed alpha
Helix 52
AF7
E
179 189Right-handed alpha
Helix 53
AF8
E
197 201Right-handed 310
Helix 54
AF9
E
269 276Right-handed alpha
Helix 55
AG1
E
285 306Right-handed alpha
Helix 56
AG2
E
329 341Right-handed alpha
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There are 8 sheets in PDB entry 6NT8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
224 228first strand
Strand 2
A
249 252anti-parallel
Strand 3
A
260 266anti-parallel
Strand 4
A
203 208parallel
Strand 5
A
314 319parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
233 237first strand
Strand 2
A
240 245anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
224 228first strand
Strand 2
B
249 252anti-parallel
Strand 3
B
260 266anti-parallel
Strand 4
B
203 208parallel
Strand 5
B
314 319parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
233 237first strand
Strand 2
B
240 245anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
224 228first strand
Strand 2
D
249 252anti-parallel
Strand 3
D
260 266anti-parallel
Strand 4
D
203 208parallel
Strand 5
D
314 319parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
233 237first strand
Strand 2
D
240 245anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
224 228first strand
Strand 2
E
249 252anti-parallel
Strand 3
E
260 266anti-parallel
Strand 4
E
203 208parallel
Strand 5
E
314 319parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
233 237first strand
Strand 2
E
240 245anti-parallel
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