Analysis of interatomic Contacts of Structural Units in PDB entry:
6NT9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6NT9 entry

There are 4 chains in PDB entry 6NT9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	LEU 658
C	ASP 369	ASP 377
B	MET 1	LEU 658
D	ASP 369	ASP 377

There are 32 helices in PDB entry 6NT9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	50	61	Right-handed alpha
Helix 2	AA2	A	93	99	Right-handed alpha
Helix 3	AA3	A	100	104	Right-handed 310
Helix 4	AA4	A	108	130	Right-handed alpha
Helix 5	AA5	A	204	217	Right-handed alpha
Helix 6	AA6	A	232	240	Right-handed alpha
Helix 7	AA7	A	270	285	Right-handed alpha
Helix 8	AA8	A	294	307	Right-handed alpha
Helix 9	AA9	A	331	344	Right-handed alpha
Helix 10	AB1	A	366	370	Right-handed 310
Helix 11	AB2	A	409	483	Right-handed alpha
Helix 12	AB3	A	497	527	Right-handed alpha
Helix 13	AB4	A	535	539	Right-handed 310
Helix 14	AB5	A	547	572	Right-handed alpha
Helix 15	AB6	A	576	605	Right-handed alpha
Helix 16	AB7	A	605	658	Right-handed alpha
Helix 17	AB8	B	50	61	Right-handed alpha
Helix 18	AB9	B	93	99	Right-handed alpha
Helix 19	AC1	B	100	104	Right-handed 310
Helix 20	AC2	B	108	130	Right-handed alpha
Helix 21	AC3	B	204	217	Right-handed alpha
Helix 22	AC4	B	232	240	Right-handed alpha
Helix 23	AC5	B	270	285	Right-handed alpha
Helix 24	AC6	B	294	307	Right-handed alpha
Helix 25	AC7	B	331	344	Right-handed alpha
Helix 26	AC8	B	366	370	Right-handed 310
Helix 27	AC9	B	409	483	Right-handed alpha
Helix 28	AD1	B	497	527	Right-handed alpha
Helix 29	AD2	B	535	539	Right-handed 310
Helix 30	AD3	B	547	572	Right-handed alpha
Helix 31	AD4	B	576	605	Right-handed alpha
Helix 32	AD5	B	605	658	Right-handed alpha

There are 10 sheets in PDB entry 6NT9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2	3	first strand
Strand 2	A	7	9	anti-parallel
Strand 3	A	21	28	anti-parallel
Strand 4	A	14	16	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2	3	first strand
Strand 2	A	7	9	anti-parallel
Strand 3	A	21	28	anti-parallel
Strand 4	A	34	40	anti-parallel
Strand 5	A	82	86	anti-parallel
Strand 6	A	70	75	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	141	145	first strand
Strand 2	A	151	155	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	221	222	first strand
Strand 2	A	247	249	parallel
Strand 3	A	258	260	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	320	326	first strand
Strand 2	A	309	315	anti-parallel
Strand 3	A	379	382	parallel
Strand 4	A	351	353	anti-parallel
Strand 5	A	358	359	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2	3	first strand
Strand 2	B	7	9	anti-parallel
Strand 3	B	21	28	anti-parallel
Strand 4	B	14	16	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2	3	first strand
Strand 2	B	7	9	anti-parallel
Strand 3	B	21	28	anti-parallel
Strand 4	B	34	40	anti-parallel
Strand 5	B	82	86	anti-parallel
Strand 6	B	70	75	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	141	145	first strand
Strand 2	B	151	155	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	221	222	first strand
Strand 2	B	247	249	parallel
Strand 3	B	258	260	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	320	326	first strand
Strand 2	B	309	315	anti-parallel
Strand 3	B	379	382	parallel
Strand 4	B	351	353	anti-parallel
Strand 5	B	358	359	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6NT9

Analysis of interatomic Contacts of Structural Units in PDB entry:
6NT9