Analysis of interatomic Contacts of Structural Units in PDB entry:
6NTW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6NTW entry

There is 1 chain in PDB entry 6NTW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 37ARG 615
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 6NTW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
40 47Right-handed alpha
Helix 2
AA2
A
77 82Right-handed 310
Helix 3
AA3
A
90 101Right-handed alpha
Helix 4
AA4
A
109 127Right-handed alpha
Helix 5
AA5
A
130 140Right-handed alpha
Helix 6
AA6
A
146 175Right-handed alpha
Helix 7
AA7
A
187 200Right-handed alpha
Helix 8
AA8
A
202 209Right-handed alpha
Helix 9
AA9
A
216 230Right-handed alpha
Helix 10
AB1
A
251 262Right-handed alpha
Helix 11
AB2
A
318 332Right-handed alpha
Helix 12
AB3
A
341 350Right-handed alpha
Helix 13
AB4
A
351 366Right-handed alpha
Helix 14
AB5
A
367 369Right-handed 310
Helix 15
AB6
A
428 436Right-handed alpha
Helix 16
AB7
A
436 441Right-handed alpha
Helix 17
AB8
A
444 450Right-handed alpha
Helix 18
AB9
A
465 469Right-handed 310
Helix 19
AC1
A
470 474Right-handed 310
Helix 20
AC2
A
513 519Right-handed 310
Helix 21
AC3
A
533 544Right-handed alpha
Helix 22
AC4
A
548 559Right-handed alpha
Helix 23
AC5
A
606 614Right-handed alpha
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There are 4 sheets in PDB entry 6NTW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
412 415first strand
Strand 2
A
571 575anti-parallel
Strand 3
A
376 380parallel
Strand 4
A
385 390anti-parallel
Strand 5
A
393 403anti-parallel
Strand 6
A
523 525parallel
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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
412 415first strand
Strand 2
A
571 575anti-parallel
Strand 3
A
376 380parallel
Strand 4
A
385 390anti-parallel
Strand 5
A
393 403anti-parallel
Strand 6
A
529 531anti-parallel
Strand 7
A
508 509parallel
Strand 8
A
496 499anti-parallel
Strand 9
A
418 421anti-parallel
Strand 10
A
562 565anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
425 426first strand
Strand 2
A
482 485anti-parallel
Strand 3
A
452 455anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
579 581first strand
Strand 2
A
587 589anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il