Analysis of interatomic Contacts of Structural Units in PDB entry:
6NUD

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6NUD entry

There are 12 chains in PDB entry 6NUD (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 12	GLY 119
B	LYS 12	GLY 119
H	A 1	C 40
I	TYR 3	LEU 297
J	LYS 3	LYS 757
M	LYS 12	GLY 119
U	A 1	A 28
C	THR 2	ASN 213
E	THR 2	ASN 213
N	THR 2	ASN 213
O	THR 2	ASN 213
P	THR 2	ASN 213

There are 87 helices in PDB entry 6NUD. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	15	20	Right-handed alpha
Helix 2	AA2	A	39	47	Right-handed alpha
Helix 3	AA3	A	59	71	Right-handed alpha
Helix 4	AA4	A	75	86	Right-handed alpha
Helix 5	AA5	A	86	94	Right-handed alpha
Helix 6	AA6	A	96	108	Right-handed alpha
Helix 7	AA7	A	108	117	Right-handed alpha
Helix 8	AA8	B	15	20	Right-handed alpha
Helix 9	AA9	B	38	47	Right-handed alpha
Helix 10	AB1	B	60	71	Right-handed alpha
Helix 11	AB2	B	72	74	Right-handed 310
Helix 12	AB3	B	75	86	Right-handed alpha
Helix 13	AB4	B	86	94	Right-handed alpha
Helix 14	AB5	B	96	107	Right-handed alpha
Helix 15	AB6	B	108	113	Right-handed alpha
Helix 16	AB7	I	29	44	Right-handed alpha
Helix 17	AB8	I	45	54	Right-handed alpha
Helix 18	AB9	I	89	102	Right-handed alpha
Helix 19	AC1	I	113	118	Right-handed alpha
Helix 20	AC2	I	165	169	Right-handed 310
Helix 21	AC3	I	172	176	Right-handed 310
Helix 22	AC4	I	225	230	Right-handed alpha
Helix 23	AC5	J	5	12	Right-handed alpha
Helix 24	AC6	J	17	25	Right-handed alpha
Helix 25	AC7	J	30	43	Right-handed alpha
Helix 26	AC8	J	46	54	Right-handed alpha
Helix 27	AC9	J	74	81	Right-handed alpha
Helix 28	AD1	J	110	114	Right-handed 310
Helix 29	AD2	J	173	178	Right-handed alpha
Helix 30	AD3	J	180	184	Right-handed 310
Helix 31	AD4	J	197	219	Right-handed alpha
Helix 32	AD5	J	231	238	Right-handed alpha
Helix 33	AD6	J	266	290	Right-handed alpha
Helix 34	AD7	J	292	296	Right-handed 310
Helix 35	AD8	J	312	326	Right-handed alpha
Helix 36	AD9	J	347	351	Right-handed 310
Helix 37	AE1	J	357	367	Right-handed alpha
Helix 38	AE2	J	371	376	Right-handed alpha
Helix 39	AE3	J	384	388	Right-handed 310
Helix 40	AE4	J	420	428	Right-handed alpha
Helix 41	AE5	J	539	552	Right-handed alpha
Helix 42	AE6	J	555	561	Right-handed alpha
Helix 43	AE7	J	582	601	Right-handed alpha
Helix 44	AE8	J	619	627	Right-handed alpha
Helix 45	AE9	J	628	634	Right-handed alpha
Helix 46	AF1	J	635	637	Right-handed 310
Helix 47	AF2	J	654	659	Right-handed alpha
Helix 48	AF3	J	662	667	Right-handed alpha
Helix 49	AF4	J	672	676	Right-handed 310
Helix 50	AF5	J	679	682	Right-handed 310
Helix 51	AF6	J	683	690	Right-handed alpha
Helix 52	AF7	J	696	708	Right-handed alpha
Helix 53	AF8	J	709	714	Right-handed alpha
Helix 54	AF9	J	719	722	Right-handed 310
Helix 55	AG1	J	723	733	Right-handed alpha
Helix 56	AG2	J	740	755	Right-handed alpha
Helix 57	AG3	M	15	20	Right-handed alpha
Helix 58	AG4	M	39	50	Right-handed alpha
Helix 59	AG5	M	58	71	Right-handed alpha
Helix 60	AG6	M	75	86	Right-handed alpha
Helix 61	AG7	M	86	94	Right-handed alpha
Helix 62	AG8	M	96	108	Right-handed alpha
Helix 63	AG9	M	108	113	Right-handed alpha
Helix 64	AH1	C	50	61	Right-handed alpha
Helix 65	AH2	C	105	110	Right-handed alpha
Helix 66	AH3	C	162	179	Right-handed alpha
Helix 67	AH4	E	49	61	Right-handed alpha
Helix 68	AH5	E	79	84	Right-handed alpha
Helix 69	AH6	E	105	110	Right-handed alpha
Helix 70	AH7	E	111	113	Right-handed 310
Helix 71	AH8	E	163	178	Right-handed alpha
Helix 72	AH9	N	49	61	Right-handed alpha
Helix 73	AI1	N	79	83	Right-handed 310
Helix 74	AI2	N	105	113	Right-handed alpha
Helix 75	AI3	N	162	179	Right-handed alpha
Helix 76	AI4	N	185	189	Right-handed 310
Helix 77	AI5	O	49	61	Right-handed alpha
Helix 78	AI6	O	79	84	Right-handed alpha
Helix 79	AI7	O	105	110	Right-handed alpha
Helix 80	AI8	O	111	113	Right-handed 310
Helix 81	AI9	O	162	178	Right-handed alpha
Helix 82	AJ1	P	49	61	Right-handed alpha
Helix 83	AJ2	P	79	84	Right-handed alpha
Helix 84	AJ3	P	105	110	Right-handed alpha
Helix 85	AJ4	P	111	113	Right-handed 310
Helix 86	AJ5	P	162	178	Right-handed alpha
Helix 87	AJ6	P	185	189	Right-handed 310

There are 26 sheets in PDB entry 6NUD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	5	6	first strand
Strand 2	I	155	159	anti-parallel
Strand 3	I	64	66	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	72	73	first strand
Strand 2	I	105	106	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	129	132	first strand
Strand 2	I	144	147	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	204	205	first strand
Strand 2	I	294	295	anti-parallel
Strand 3	I	213	214	anti-parallel
Strand 4	I	264	265	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	303	307	first strand
Strand 2	J	241	249	anti-parallel
Strand 3	J	338	342	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	303	307	first strand
Strand 2	J	241	249	anti-parallel
Strand 3	J	345	346	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	434	436	first strand
Strand 2	J	452	454	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	568	570	first strand
Strand 2	J	578	581	anti-parallel
Strand 3	J	511	514	anti-parallel
Strand 4	J	612	614	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	517	518	first strand
Strand 2	J	607	608	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	96	97	first strand
Strand 2	C	148	154	anti-parallel
Strand 3	C	5	14	anti-parallel
Strand 4	C	193	202	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	119	122	first strand
Strand 2	C	137	140	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	96	97	first strand
Strand 2	E	148	154	anti-parallel
Strand 3	E	5	14	anti-parallel
Strand 4	E	193	196	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	96	97	first strand
Strand 2	E	148	154	anti-parallel
Strand 3	E	5	14	anti-parallel
Strand 4	E	201	202	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	119	122	first strand
Strand 2	E	137	140	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	125	126	first strand
Strand 2	E	132	133	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	96	97	first strand
Strand 2	N	152	154	anti-parallel
Strand 3	N	5	7	anti-parallel
Strand 4	N	201	202	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	148	149	first strand
Strand 2	N	10	14	anti-parallel
Strand 3	N	193	196	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	119	122	first strand
Strand 2	N	137	140	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	125	126	first strand
Strand 2	N	132	133	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	148	154	first strand
Strand 2	O	5	12	anti-parallel
Strand 3	O	195	196	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	148	154	first strand
Strand 2	O	5	12	anti-parallel
Strand 3	O	201	202	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	118	122	first strand
Strand 2	O	137	141	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	96	97	first strand
Strand 2	P	148	154	anti-parallel
Strand 3	P	5	14	anti-parallel
Strand 4	P	193	196	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	96	97	first strand
Strand 2	P	148	154	anti-parallel
Strand 3	P	5	14	anti-parallel
Strand 4	P	201	202	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	119	122	first strand
Strand 2	P	137	140	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	125	126	first strand
Strand 2	P	132	133	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6NUD

Analysis of interatomic Contacts of Structural Units in PDB entry:
6NUD