Analysis of interatomic Contacts of Structural Units in PDB entry:
6NUE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6NUE entry

There are 11 chains in PDB entry 6NUE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
J	LYS 3	LYS 757
A	LYS 12	GLY 119
B	LYS 12	GLY 119
C	THR 2	ASN 213
E	THR 2	ASN 213
H	A 1	C 40
I	TYR 3	LEU 297
M	LYS 12	GLY 119
N	THR 2	ASN 213
O	THR 2	ASN 213
P	THR 2	ASN 213

There are 83 helices in PDB entry 6NUE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	J	5	14	Right-handed alpha
Helix 2	AA2	J	17	25	Right-handed alpha
Helix 3	AA3	J	30	43	Right-handed alpha
Helix 4	AA4	J	46	54	Right-handed alpha
Helix 5	AA5	J	72	81	Right-handed alpha
Helix 6	AA6	J	110	114	Right-handed 310
Helix 7	AA7	J	152	159	Right-handed alpha
Helix 8	AA8	J	173	178	Right-handed alpha
Helix 9	AA9	J	180	184	Right-handed 310
Helix 10	AB1	J	197	219	Right-handed alpha
Helix 11	AB2	J	260	265	Right-handed 310
Helix 12	AB3	J	266	290	Right-handed alpha
Helix 13	AB4	J	311	326	Right-handed alpha
Helix 14	AB5	J	327	332	Right-handed alpha
Helix 15	AB6	J	347	351	Right-handed 310
Helix 16	AB7	J	357	376	Right-handed alpha
Helix 17	AB8	J	384	389	Right-handed alpha
Helix 18	AB9	J	421	428	Right-handed alpha
Helix 19	AC1	J	495	500	Right-handed alpha
Helix 20	AC2	J	539	555	Right-handed alpha
Helix 21	AC3	J	556	562	Right-handed alpha
Helix 22	AC4	J	582	602	Right-handed alpha
Helix 23	AC5	J	619	634	Right-handed alpha
Helix 24	AC6	J	653	658	Right-handed alpha
Helix 25	AC7	J	659	664	Right-handed alpha
Helix 26	AC8	J	664	672	Right-handed alpha
Helix 27	AC9	J	682	692	Right-handed alpha
Helix 28	AD1	J	697	714	Right-handed alpha
Helix 29	AD2	J	717	722	Right-handed 310
Helix 30	AD3	J	725	733	Right-handed alpha
Helix 31	AD4	J	737	755	Right-handed alpha
Helix 32	AD5	A	37	42	Right-handed alpha
Helix 33	AD6	A	42	50	Right-handed alpha
Helix 34	AD7	A	57	72	Right-handed alpha
Helix 35	AD8	A	75	86	Right-handed alpha
Helix 36	AD9	A	86	94	Right-handed alpha
Helix 37	AE1	A	96	118	Right-handed alpha
Helix 38	AE2	B	37	50	Right-handed alpha
Helix 39	AE3	B	57	71	Right-handed alpha
Helix 40	AE4	B	72	74	Right-handed 310
Helix 41	AE5	B	75	86	Right-handed alpha
Helix 42	AE6	B	86	94	Right-handed alpha
Helix 43	AE7	B	96	113	Right-handed alpha
Helix 44	AE8	B	113	118	Right-handed alpha
Helix 45	AE9	C	49	61	Right-handed alpha
Helix 46	AF1	C	79	84	Right-handed alpha
Helix 47	AF2	C	104	107	Right-handed 310
Helix 48	AF3	C	108	113	Right-handed alpha
Helix 49	AF4	C	162	178	Right-handed alpha
Helix 50	AF5	E	49	61	Right-handed alpha
Helix 51	AF6	E	76	84	Right-handed alpha
Helix 52	AF7	E	105	113	Right-handed alpha
Helix 53	AF8	E	162	178	Right-handed alpha
Helix 54	AF9	E	185	189	Right-handed 310
Helix 55	AG1	I	29	44	Right-handed alpha
Helix 56	AG2	I	45	54	Right-handed alpha
Helix 57	AG3	I	89	102	Right-handed alpha
Helix 58	AG4	I	113	118	Right-handed alpha
Helix 59	AG5	I	165	170	Right-handed alpha
Helix 60	AG6	I	172	176	Right-handed 310
Helix 61	AG7	I	225	230	Right-handed alpha
Helix 62	AG8	M	37	42	Right-handed alpha
Helix 63	AG9	M	42	50	Right-handed alpha
Helix 64	AH1	M	57	72	Right-handed alpha
Helix 65	AH2	M	75	86	Right-handed alpha
Helix 66	AH3	M	86	94	Right-handed alpha
Helix 67	AH4	M	96	113	Right-handed alpha
Helix 68	AH5	M	113	118	Right-handed alpha
Helix 69	AH6	N	49	61	Right-handed alpha
Helix 70	AH7	N	76	81	Right-handed alpha
Helix 71	AH8	N	105	110	Right-handed alpha
Helix 72	AH9	N	162	179	Right-handed alpha
Helix 73	AI1	N	185	189	Right-handed 310
Helix 74	AI2	O	49	57	Right-handed alpha
Helix 75	AI3	O	76	84	Right-handed alpha
Helix 76	AI4	O	105	113	Right-handed alpha
Helix 77	AI5	O	162	178	Right-handed alpha
Helix 78	AI6	P	49	61	Right-handed alpha
Helix 79	AI7	P	76	84	Right-handed alpha
Helix 80	AI8	P	104	108	Right-handed 310
Helix 81	AI9	P	109	113	Right-handed 310
Helix 82	AJ1	P	162	178	Right-handed alpha
Helix 83	AJ2	P	185	189	Right-handed 310

There are 22 sheets in PDB entry 6NUE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	306	308	first strand
Strand 2	J	241	246	anti-parallel
Strand 3	J	341	346	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	409	410	first strand
Strand 2	J	415	416	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	567	570	first strand
Strand 2	J	578	581	anti-parallel
Strand 3	J	511	514	anti-parallel
Strand 4	J	611	614	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	517	518	first strand
Strand 2	J	607	608	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	642	643	first strand
Strand 2	J	650	651	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	96	97	first strand
Strand 2	C	149	154	anti-parallel
Strand 3	C	5	14	anti-parallel
Strand 4	C	193	202	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	118	122	first strand
Strand 2	C	137	141	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	96	97	first strand
Strand 2	E	149	154	anti-parallel
Strand 3	E	5	12	anti-parallel
Strand 4	E	195	196	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	96	97	first strand
Strand 2	E	149	154	anti-parallel
Strand 3	E	5	12	anti-parallel
Strand 4	E	201	202	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	118	122	first strand
Strand 2	E	137	141	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	64	66	first strand
Strand 2	I	155	160	anti-parallel
Strand 3	I	4	9	anti-parallel
Strand 4	I	190	192	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	71	73	first strand
Strand 2	I	105	107	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	126	134	first strand
Strand 2	I	142	150	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	148	154	first strand
Strand 2	N	5	12	anti-parallel
Strand 3	N	195	202	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	121	125	first strand
Strand 2	N	133	138	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	96	97	first strand
Strand 2	O	148	154	anti-parallel
Strand 3	O	5	12	anti-parallel
Strand 4	O	195	196	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	96	97	first strand
Strand 2	O	148	154	anti-parallel
Strand 3	O	5	12	anti-parallel
Strand 4	O	201	202	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	118	119	first strand
Strand 2	O	140	141	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	96	97	first strand
Strand 2	P	149	154	anti-parallel
Strand 3	P	5	12	anti-parallel
Strand 4	P	195	196	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	96	97	first strand
Strand 2	P	149	154	anti-parallel
Strand 3	P	5	12	anti-parallel
Strand 4	P	201	202	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	118	122	first strand
Strand 2	P	137	141	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	125	126	first strand
Strand 2	P	132	133	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6NUE

Analysis of interatomic Contacts of Structural Units in PDB entry:
6NUE