Analysis of interatomic Contacts of Structural Units in PDB entry:
6NUT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6NUT entry

There are 2 chains in PDB entry 6NUT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 20THR 406
D
 A 1001 A 1006
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 6NUT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
22 27Right-handed 310
Helix 2
AA2
A
48 62Right-handed alpha
Helix 3
AA3
A
66 68Right-handed 310
Helix 4
AA4
A
69 84Right-handed alpha
Helix 5
AA5
A
86 91Right-handed alpha
Helix 6
AA6
A
93 101Right-handed alpha
Helix 7
AA7
A
116 120Right-handed 310
Helix 8
AA8
A
128 136Right-handed alpha
Helix 9
AA9
A
146 156Right-handed alpha
Helix 10
AB1
A
160 163Right-handed 310
Helix 11
AB2
A
164 182Right-handed alpha
Helix 12
AB3
A
188 192Right-handed 310
Helix 13
AB4
A
193 207Right-handed alpha
Helix 14
AB5
A
207 221Right-handed alpha
Helix 15
AB6
A
226 238Right-handed alpha
Helix 16
AB7
A
245 254Right-handed alpha
Helix 17
AB8
A
266 269Right-handed 310
Helix 18
AB9
A
270 288Right-handed alpha
Helix 19
AC1
A
289 297Right-handed 310
Helix 20
AC2
A
304 308Right-handed 310
Helix 21
AC3
A
309 312Right-handed 310
Helix 22
AC4
A
313 325Right-handed alpha
Helix 23
AC5
A
330 334Right-handed 310
Helix 24
AC6
A
337 363Right-handed alpha
Helix 25
AC7
A
364 366Right-handed 310
Helix 26
AC8
A
370 406Right-handed alpha
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There are 2 sheets in PDB entry 6NUT. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 44first strand
Strand 2
A
104 109parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
255 258first strand
Strand 2
A
261 264anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il