Analysis of interatomic Contacts of Structural Units in PDB entry:
6NUW

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6NUW entry

There are 13 chains in PDB entry 6NUW (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	ASN -1	PHE 242
C	SER 153	LEU 359
D	VAL 125	PRO 364
E	ASP 16	LYS 454
F	ILE 162	ILE 386
G	THR 4	ALA 204
I	GLN 124	GLN 321
H	PRO 43	SER 459
J	ASN 2	ASN 153
Y	ASP 313	UNK 1685
X	UNK 71	UNK 208
M	UNK 70	UNK 164
U	UNK 1	UNK 23

There are 95 helices in PDB entry 6NUW. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	19	28	Right-handed alpha
Helix 2	AA2	B	94	108	Right-handed alpha
Helix 3	AA3	B	117	128	Right-handed alpha
Helix 4	AA4	B	153	157	Right-handed 310
Helix 5	AA5	B	166	176	Right-handed alpha
Helix 6	AA6	B	182	187	Right-handed alpha
Helix 7	AA7	B	187	197	Right-handed alpha
Helix 8	AA8	B	229	240	Right-handed alpha
Helix 9	AA9	C	156	173	Right-handed alpha
Helix 10	AB1	C	246	252	Right-handed alpha
Helix 11	AB2	C	253	257	Right-handed 310
Helix 12	AB3	C	261	286	Right-handed alpha
Helix 13	AB4	C	287	292	Right-handed alpha
Helix 14	AB5	C	338	345	Right-handed alpha
Helix 15	AB6	C	347	359	Right-handed alpha
Helix 16	AB7	D	133	140	Right-handed alpha
Helix 17	AB8	D	151	160	Right-handed alpha
Helix 18	AB9	D	226	232	Right-handed alpha
Helix 19	AC1	D	236	263	Right-handed alpha
Helix 20	AC2	D	334	345	Right-handed alpha
Helix 21	AC3	D	349	363	Right-handed alpha
Helix 22	AC4	E	17	27	Right-handed alpha
Helix 23	AC5	E	31	41	Right-handed alpha
Helix 24	AC6	E	51	64	Right-handed alpha
Helix 25	AC7	E	70	79	Right-handed alpha
Helix 26	AC8	E	87	99	Right-handed alpha
Helix 27	AC9	E	127	136	Right-handed alpha
Helix 28	AD1	E	220	232	Right-handed alpha
Helix 29	AD2	E	251	256	Right-handed alpha
Helix 30	AD3	E	270	275	Right-handed alpha
Helix 31	AD4	E	285	290	Right-handed alpha
Helix 32	AD5	E	301	309	Right-handed alpha
Helix 33	AD6	E	318	334	Right-handed alpha
Helix 34	AD7	E	408	418	Right-handed alpha
Helix 35	AD8	E	423	427	Right-handed 310
Helix 36	AD9	E	428	433	Right-handed alpha
Helix 37	AE1	F	163	190	Right-handed alpha
Helix 38	AE2	F	197	221	Right-handed alpha
Helix 39	AE3	F	234	293	Right-handed alpha
Helix 40	AE4	F	324	330	Right-handed alpha
Helix 41	AE5	F	346	355	Right-handed 310
Helix 42	AE6	F	356	375	Right-handed alpha
Helix 43	AE7	F	376	381	Right-handed 310
Helix 44	AE8	G	6	27	Right-handed alpha
Helix 45	AE9	G	29	34	Right-handed alpha
Helix 46	AF1	G	42	84	Right-handed alpha
Helix 47	AF2	G	92	97	Right-handed alpha
Helix 48	AF3	G	104	113	Right-handed alpha
Helix 49	AF4	G	140	177	Right-handed alpha
Helix 50	AF5	G	188	204	Right-handed alpha
Helix 51	AF6	I	125	150	Right-handed alpha
Helix 52	AF7	I	171	230	Right-handed alpha
Helix 53	AF8	I	236	250	Right-handed alpha
Helix 54	AF9	I	250	266	Right-handed alpha
Helix 55	AG1	I	268	273	Right-handed alpha
Helix 56	AG2	I	290	300	Right-handed alpha
Helix 57	AG3	I	302	321	Right-handed alpha
Helix 58	AG4	H	44	54	Right-handed alpha
Helix 59	AG5	H	57	65	Right-handed alpha
Helix 60	AG6	H	83	88	Right-handed alpha
Helix 61	AG7	H	105	120	Right-handed alpha
Helix 62	AG8	H	130	146	Right-handed alpha
Helix 63	AG9	H	153	164	Right-handed alpha
Helix 64	AH1	H	167	183	Right-handed alpha
Helix 65	AH2	H	189	201	Right-handed alpha
Helix 66	AH3	H	201	209	Right-handed alpha
Helix 67	AH4	H	211	232	Right-handed alpha
Helix 68	AH5	H	298	324	Right-handed alpha
Helix 69	AH6	H	326	348	Right-handed alpha
Helix 70	AH7	H	355	374	Right-handed alpha
Helix 71	AH8	H	380	386	Right-handed alpha
Helix 72	AH9	H	387	396	Right-handed alpha
Helix 73	AI1	H	412	430	Right-handed alpha
Helix 74	AI2	H	437	457	Right-handed alpha
Helix 75	AI3	J	3	29	Right-handed alpha
Helix 76	AI4	J	36	46	Right-handed alpha
Helix 77	AI5	J	50	73	Right-handed alpha
Helix 78	AI6	J	86	127	Right-handed alpha
Helix 79	AI7	J	134	153	Right-handed alpha
Helix 80	AI8	Y	315	326	Right-handed alpha
Helix 81	AI9	Y	329	335	Right-handed alpha
Helix 82	AJ1	Y	340	369	Right-handed alpha
Helix 83	AJ2	Y	480	490	Right-handed alpha
Helix 84	AJ3	Y	655	666	Right-handed alpha
Helix 85	AJ4	Y	673	678	Right-handed alpha
Helix 86	AJ5	Y	684	696	Right-handed alpha
Helix 87	AJ6	Y	1197	1204	Right-handed alpha
Helix 88	AJ7	Y	1206	1212	Right-handed alpha
Helix 89	AJ8	Y	1668	1681	Right-handed alpha
Helix 90	AJ9	X	72	128	Right-handed alpha
Helix 91	AK1	X	137	167	Right-handed alpha
Helix 92	AK2	X	177	206	Right-handed alpha
Helix 93	AK3	M	72	127	Right-handed alpha
Helix 94	AK4	M	150	164	Right-handed alpha
Helix 95	AK5	U	2	23	Right-handed alpha

There are 9 sheets in PDB entry 6NUW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3	4	first strand
Strand 2	B	222	223	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	75	77	first strand
Strand 2	B	85	88	anti-parallel
Strand 3	B	7	10	anti-parallel
Strand 4	B	111	112	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	32	38	first strand
Strand 2	B	53	59	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	148	149	first strand
Strand 2	B	205	207	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	209	210	first strand
Strand 2	B	214	215	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	175	177	first strand
Strand 2	C	204	206	anti-parallel
Strand 3	C	220	222	anti-parallel
Strand 4	C	238	239	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	298	299	first strand
Strand 2	C	305	309	anti-parallel
Strand 3	C	314	318	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	108	109	first strand
Strand 2	E	211	213	anti-parallel
Strand 3	E	196	205	anti-parallel
Strand 4	E	153	161	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	397	403	first strand
Strand 2	E	386	392	anti-parallel
Strand 3	E	441	442	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6NUW

Analysis of interatomic Contacts of Structural Units in PDB entry:
6NUW