Analysis of interatomic Contacts of Structural Units in PDB entry:
6NVA

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6NVA entry

There are 16 chains in PDB entry 6NVA (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	HIS -1	ILE 160
A	GLU 162	LEU 292
B	HIS -1	ILE 160
B	GLU 162	LEU 292
C	HIS -1	ILE 160
C	GLU 162	LEU 292
D	HIS -1	ILE 160
D	GLU 162	LEU 292
E	HIS -1	ILE 160
E	GLU 162	LEU 292
F	HIS 0	ILE 160
F	GLU 162	LEU 292
G	HIS 0	ILE 160
G	GLU 162	LEU 292
H	HIS -1	ILE 160
H	GLU 162	LEU 292

There are122 helices in PDB entry 6NVA. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	-1	3	Right-handed 310
Helix 2	AA2	A	20	35	Right-handed alpha
Helix 3	AA3	A	47	51	Right-handed 310
Helix 4	AA4	A	52	68	Right-handed alpha
Helix 5	AA5	A	81	92	Right-handed alpha
Helix 6	AA6	A	111	124	Right-handed alpha
Helix 7	AA7	A	135	140	Right-handed alpha
Helix 8	AA8	A	144	153	Right-handed alpha
Helix 9	AA9	A	168	175	Right-handed alpha
Helix 10	AB1	A	187	189	Right-handed 310
Helix 11	AB2	A	190	197	Right-handed alpha
Helix 12	AB3	A	205	209	Right-handed 310
Helix 13	AB4	A	210	224	Right-handed alpha
Helix 14	AB5	A	225	243	Right-handed alpha
Helix 15	AB6	A	249	259	Right-handed alpha
Helix 16	AB7	A	275	289	Right-handed alpha
Helix 17	AB8	B	20	35	Right-handed alpha
Helix 18	AB9	B	47	51	Right-handed 310
Helix 19	AC1	B	52	68	Right-handed alpha
Helix 20	AC2	B	81	92	Right-handed alpha
Helix 21	AC3	B	111	125	Right-handed alpha
Helix 22	AC4	B	135	140	Right-handed alpha
Helix 23	AC5	B	144	153	Right-handed alpha
Helix 24	AC6	B	168	175	Right-handed alpha
Helix 25	AC7	B	187	189	Right-handed 310
Helix 26	AC8	B	190	197	Right-handed alpha
Helix 27	AC9	B	205	209	Right-handed 310
Helix 28	AD1	B	210	223	Right-handed alpha
Helix 29	AD2	B	225	243	Right-handed alpha
Helix 30	AD3	B	249	259	Right-handed alpha
Helix 31	AD4	B	275	289	Right-handed alpha
Helix 32	AD5	C	20	35	Right-handed alpha
Helix 33	AD6	C	47	51	Right-handed 310
Helix 34	AD7	C	52	68	Right-handed alpha
Helix 35	AD8	C	81	91	Right-handed alpha
Helix 36	AD9	C	111	124	Right-handed alpha
Helix 37	AE1	C	135	140	Right-handed alpha
Helix 38	AE2	C	144	153	Right-handed alpha
Helix 39	AE3	C	168	175	Right-handed alpha
Helix 40	AE4	C	187	189	Right-handed 310
Helix 41	AE5	C	190	197	Right-handed alpha
Helix 42	AE6	C	205	209	Right-handed 310
Helix 43	AE7	C	210	224	Right-handed alpha
Helix 44	AE8	C	225	243	Right-handed alpha
Helix 45	AE9	C	249	259	Right-handed alpha
Helix 46	AF1	C	275	289	Right-handed alpha
Helix 47	AF2	D	-1	3	Right-handed 310
Helix 48	AF3	D	20	35	Right-handed alpha
Helix 49	AF4	D	47	51	Right-handed 310
Helix 50	AF5	D	52	68	Right-handed alpha
Helix 51	AF6	D	81	91	Right-handed alpha
Helix 52	AF7	D	111	124	Right-handed alpha
Helix 53	AF8	D	135	140	Right-handed alpha
Helix 54	AF9	D	144	152	Right-handed alpha
Helix 55	AG1	D	168	175	Right-handed alpha
Helix 56	AG2	D	187	189	Right-handed 310
Helix 57	AG3	D	190	197	Right-handed alpha
Helix 58	AG4	D	205	209	Right-handed 310
Helix 59	AG5	D	210	223	Right-handed alpha
Helix 60	AG6	D	225	243	Right-handed alpha
Helix 61	AG7	D	249	259	Right-handed alpha
Helix 62	AG8	D	275	289	Right-handed alpha
Helix 63	AG9	E	20	35	Right-handed alpha
Helix 64	AH1	E	47	51	Right-handed 310
Helix 65	AH2	E	52	68	Right-handed alpha
Helix 66	AH3	E	81	91	Right-handed alpha
Helix 67	AH4	E	111	125	Right-handed alpha
Helix 68	AH5	E	135	140	Right-handed alpha
Helix 69	AH6	E	144	153	Right-handed alpha
Helix 70	AH7	E	168	175	Right-handed alpha
Helix 71	AH8	E	187	189	Right-handed 310
Helix 72	AH9	E	190	197	Right-handed alpha
Helix 73	AI1	E	205	209	Right-handed 310
Helix 74	AI2	E	210	223	Right-handed alpha
Helix 75	AI3	E	225	243	Right-handed alpha
Helix 76	AI4	E	249	259	Right-handed alpha
Helix 77	AI5	E	275	289	Right-handed alpha
Helix 78	AI6	F	20	35	Right-handed alpha
Helix 79	AI7	F	47	51	Right-handed 310
Helix 80	AI8	F	52	68	Right-handed alpha
Helix 81	AI9	F	81	92	Right-handed alpha
Helix 82	AJ1	F	111	124	Right-handed alpha
Helix 83	AJ2	F	135	140	Right-handed alpha
Helix 84	AJ3	F	144	153	Right-handed alpha
Helix 85	AJ4	F	168	175	Right-handed alpha
Helix 86	AJ5	F	187	189	Right-handed 310
Helix 87	AJ6	F	190	197	Right-handed alpha
Helix 88	AJ7	F	205	209	Right-handed 310
Helix 89	AJ8	F	210	223	Right-handed alpha
Helix 90	AJ9	F	225	243	Right-handed alpha
Helix 91	AK1	F	249	259	Right-handed alpha
Helix 92	AK2	F	275	289	Right-handed alpha
Helix 93	AK3	G	20	35	Right-handed alpha
Helix 94	AK4	G	47	51	Right-handed 310
Helix 95	AK5	G	52	68	Right-handed alpha
Helix 96	AK6	G	81	92	Right-handed alpha
Helix 97	AK7	G	111	125	Right-handed alpha
Helix 98	AK8	G	135	140	Right-handed alpha
Helix 99	AK9	G	144	153	Right-handed alpha
Helix 100	AL1	G	168	175	Right-handed alpha
Helix 101	AL2	G	187	189	Right-handed 310
Helix 102	AL3	G	190	197	Right-handed alpha
Helix 103	AL4	G	205	209	Right-handed 310
Helix 104	AL5	G	210	223	Right-handed alpha
Helix 105	AL6	G	225	243	Right-handed alpha
Helix 106	AL7	G	249	259	Right-handed alpha
Helix 107	AL8	G	275	289	Right-handed alpha
Helix 108	AL9	H	20	35	Right-handed alpha
Helix 109	AM1	H	47	51	Right-handed 310
Helix 110	AM2	H	52	68	Right-handed alpha
Helix 111	AM3	H	81	92	Right-handed alpha
Helix 112	AM4	H	111	125	Right-handed alpha
Helix 113	AM5	H	135	140	Right-handed alpha
Helix 114	AM6	H	144	153	Right-handed alpha
Helix 115	AM7	H	168	175	Right-handed alpha
Helix 116	AM8	H	187	189	Right-handed 310
Helix 117	AM9	H	190	197	Right-handed alpha
Helix 118	AN1	H	205	209	Right-handed 310
Helix 119	AN2	H	210	223	Right-handed alpha
Helix 120	AN3	H	225	243	Right-handed alpha
Helix 121	AN4	H	249	259	Right-handed alpha
Helix 122	AN5	H	275	289	Right-handed alpha

There are 8 sheets in PDB entry 6NVA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4	8	first strand
Strand 2	A	38	41	parallel
Strand 3	A	73	76	parallel
Strand 4	A	99	103	parallel
Strand 5	A	130	133	parallel
Strand 6	A	157	160	parallel
Strand 7	A	182	185	parallel
Strand 8	A	201	204	parallel
Strand 9	A	4	8	parallel

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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	4	8	first strand
Strand 2	B	38	41	parallel
Strand 3	B	73	76	parallel
Strand 4	B	99	103	parallel
Strand 5	B	130	133	parallel
Strand 6	B	157	160	parallel
Strand 7	B	182	185	parallel
Strand 8	B	201	204	parallel
Strand 9	B	4	8	parallel

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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	4	8	first strand
Strand 2	C	38	41	parallel
Strand 3	C	73	76	parallel
Strand 4	C	99	103	parallel
Strand 5	C	130	133	parallel
Strand 6	C	157	160	parallel
Strand 7	C	182	185	parallel
Strand 8	C	201	204	parallel
Strand 9	C	4	8	parallel

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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	4	8	first strand
Strand 2	D	38	41	parallel
Strand 3	D	73	76	parallel
Strand 4	D	99	103	parallel
Strand 5	D	130	133	parallel
Strand 6	D	157	160	parallel
Strand 7	D	182	185	parallel
Strand 8	D	201	204	parallel
Strand 9	D	4	8	parallel

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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	4	8	first strand
Strand 2	E	38	41	parallel
Strand 3	E	73	76	parallel
Strand 4	E	99	103	parallel
Strand 5	E	130	133	parallel
Strand 6	E	157	160	parallel
Strand 7	E	182	185	parallel
Strand 8	E	201	204	parallel
Strand 9	E	4	8	parallel

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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	4	8	first strand
Strand 2	F	38	41	parallel
Strand 3	F	73	76	parallel
Strand 4	F	99	103	parallel
Strand 5	F	130	133	parallel
Strand 6	F	157	160	parallel
Strand 7	F	182	185	parallel
Strand 8	F	201	204	parallel
Strand 9	F	4	8	parallel

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There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	4	8	first strand
Strand 2	G	38	41	parallel
Strand 3	G	73	76	parallel
Strand 4	G	99	103	parallel
Strand 5	G	130	133	parallel
Strand 6	G	157	160	parallel
Strand 7	G	182	185	parallel
Strand 8	G	201	204	parallel
Strand 9	G	4	8	parallel

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There are 9 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	4	8	first strand
Strand 2	H	38	41	parallel
Strand 3	H	73	76	parallel
Strand 4	H	99	103	parallel
Strand 5	H	130	133	parallel
Strand 6	H	157	160	parallel
Strand 7	H	182	185	parallel
Strand 8	H	201	204	parallel
Strand 9	H	4	8	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6NVA

Analysis of interatomic Contacts of Structural Units in PDB entry:
6NVA