Analysis of interatomic Contacts of Structural Units in PDB entry:
6NVL

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6NVL entry

There are 4 chains in PDB entry 6NVL (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	TYR 463	GLU 765
B	SER 461	THR 761
C	LEU 465	THR 761
D	TRP 471	SER 762

There are 50 helices in PDB entry 6NVL. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	474	476	Right-handed 310
Helix 2	AA2	A	521	539	Right-handed alpha
Helix 3	AA3	A	568	576	Right-handed alpha
Helix 4	AA4	A	596	617	Right-handed alpha
Helix 5	AA5	A	625	627	Right-handed 310
Helix 6	AA6	A	662	667	Right-handed 310
Helix 7	AA7	A	668	675	Right-handed alpha
Helix 8	AA8	A	678	695	Right-handed alpha
Helix 9	AA9	A	705	707	Right-handed 310
Helix 10	AB1	A	708	715	Right-handed alpha
Helix 11	AB2	A	726	737	Right-handed alpha
Helix 12	AB3	A	740	744	Right-handed 310
Helix 13	AB4	A	746	761	Right-handed alpha
Helix 14	AB5	B	474	476	Right-handed 310
Helix 15	AB6	B	521	539	Right-handed alpha
Helix 16	AB7	B	568	576	Right-handed alpha
Helix 17	AB8	B	596	617	Right-handed alpha
Helix 18	AB9	B	625	627	Right-handed 310
Helix 19	AC1	B	663	667	Right-handed 310
Helix 20	AC2	B	668	675	Right-handed alpha
Helix 21	AC3	B	678	695	Right-handed alpha
Helix 22	AC4	B	705	715	Right-handed alpha
Helix 23	AC5	B	726	737	Right-handed alpha
Helix 24	AC6	B	740	744	Right-handed 310
Helix 25	AC7	B	746	761	Right-handed alpha
Helix 26	AC8	C	474	476	Right-handed 310
Helix 27	AC9	C	522	539	Right-handed alpha
Helix 28	AD1	C	568	576	Right-handed alpha
Helix 29	AD2	C	596	617	Right-handed alpha
Helix 30	AD3	C	625	627	Right-handed 310
Helix 31	AD4	C	649	656	Right-handed 310
Helix 32	AD5	C	663	667	Right-handed 310
Helix 33	AD6	C	668	675	Right-handed alpha
Helix 34	AD7	C	678	695	Right-handed alpha
Helix 35	AD8	C	705	715	Right-handed alpha
Helix 36	AD9	C	726	737	Right-handed alpha
Helix 37	AE1	C	740	744	Right-handed 310
Helix 38	AE2	C	746	761	Right-handed alpha
Helix 39	AE3	D	474	476	Right-handed 310
Helix 40	AE4	D	522	539	Right-handed alpha
Helix 41	AE5	D	568	575	Right-handed alpha
Helix 42	AE6	D	596	617	Right-handed alpha
Helix 43	AE7	D	625	627	Right-handed 310
Helix 44	AE8	D	662	667	Right-handed 310
Helix 45	AE9	D	668	675	Right-handed alpha
Helix 46	AF1	D	678	695	Right-handed alpha
Helix 47	AF2	D	705	715	Right-handed alpha
Helix 48	AF3	D	726	737	Right-handed alpha
Helix 49	AF4	D	740	744	Right-handed 310
Helix 50	AF5	D	746	761	Right-handed alpha

There are 8 sheets in PDB entry 6NVL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	478	483	first strand
Strand 2	A	491	498	anti-parallel
Strand 3	A	508	515	anti-parallel
Strand 4	A	558	562	anti-parallel
Strand 5	A	547	551	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	629	631	first strand
Strand 2	A	637	639	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	478	480	first strand
Strand 2	B	492	498	anti-parallel
Strand 3	B	508	514	anti-parallel
Strand 4	B	558	562	anti-parallel
Strand 5	B	547	551	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	629	631	first strand
Strand 2	B	637	639	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	478	484	first strand
Strand 2	C	492	498	anti-parallel
Strand 3	C	508	514	anti-parallel
Strand 4	C	558	562	anti-parallel
Strand 5	C	547	551	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	629	631	first strand
Strand 2	C	637	639	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	478	480	first strand
Strand 2	D	492	498	anti-parallel
Strand 3	D	508	514	anti-parallel
Strand 4	D	558	562	anti-parallel
Strand 5	D	547	551	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	629	631	first strand
Strand 2	D	637	639	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6NVL

Analysis of interatomic Contacts of Structural Units in PDB entry:
6NVL