Analysis of interatomic Contacts of Structural Units in PDB entry:
6NVM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6NVM entry

There is 1 chain in PDB entry 6NVM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 42GLN 285
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 6NVM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
46 57Right-handed alpha
Helix 2
AA2
A
73 81Right-handed alpha
Helix 3
AA3
A
92 103Right-handed alpha
Helix 4
AA4
A
115 119Right-handed 310
Helix 5
AA5
A
133 135Right-handed 310
Helix 6
AA6
A
136 147Right-handed alpha
Helix 7
AA7
A
159 167Right-handed alpha
Helix 8
AA8
A
173 180Right-handed alpha
Helix 9
AA9
A
192 194Right-handed 310
Helix 10
AB1
A
218 235Right-handed alpha
Helix 11
AB2
A
239 246Right-handed alpha
Helix 12
AB3
A
249 261Right-handed alpha
Helix 13
AB4
A
267 271Right-handed 310
Helix 14
AB5
A
272 284Right-handed alpha
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There are 2 sheets in PDB entry 6NVM. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
43 44first strand
Strand 2
A
196 197anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
109 112first strand
Strand 2
A
85 89parallel
Strand 3
A
64 68parallel
Strand 4
A
126 131parallel
Strand 5
A
150 158parallel
Strand 6
A
204 211anti-parallel
Strand 7
A
183 191anti-parallel
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