Analysis of interatomic Contacts of Structural Units in PDB entry:
6NVP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6NVP entry

There is 1 chain in PDB entry 6NVP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 2LEU 216
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 6NVP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
24 26Right-handed 310
Helix 2
AA2
A
54 68Right-handed alpha
Helix 3
AA3
A
82 86Right-handed 310
Helix 4
AA4
A
89 101Right-handed alpha
Helix 5
AA5
A
111 118Right-handed alpha
Helix 6
AA6
A
121 125Right-handed 310
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There are 3 sheets in PDB entry 6NVP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 7first strand
Strand 2
A
12 16anti-parallel
Strand 3
A
20 23anti-parallel
Strand 4
A
28 31anti-parallel
Strand 5
A
72 76parallel
Strand 6
A
105 110parallel
Strand 7
A
127 130parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
133 135first strand
Strand 2
A
138 140anti-parallel
Strand 3
A
152 154parallel
Strand 4
A
182 184parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
160 162first strand
Strand 2
A
172 178anti-parallel
Strand 3
A
204 209anti-parallel
Strand 4
A
212 215anti-parallel
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