Analysis of interatomic Contacts of Structural Units in PDB entry:
6NVT

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6NVT entry

There are 4 chains in PDB entry 6NVT (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 24	LYS 291
B	LYS 24	LYS 291
C	LYS 24	LYS 291
D	LYS 24	LYS 291

There are 52 helices in PDB entry 6NVT. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	25	38	Right-handed alpha
Helix 2	AA2	A	69	71	Right-handed 310
Helix 3	AA3	A	72	88	Right-handed alpha
Helix 4	AA4	A	98	102	Right-handed 310
Helix 5	AA5	A	106	112	Right-handed alpha
Helix 6	AA6	A	119	129	Right-handed alpha
Helix 7	AA7	A	131	142	Right-handed alpha
Helix 8	AA8	A	144	155	Right-handed alpha
Helix 9	AA9	A	165	170	Right-handed alpha
Helix 10	AB1	A	171	178	Right-handed 310
Helix 11	AB2	A	182	195	Right-handed alpha
Helix 12	AB3	A	200	214	Right-handed alpha
Helix 13	AB4	A	270	291	Right-handed alpha
Helix 14	AB5	B	25	38	Right-handed alpha
Helix 15	AB6	B	69	71	Right-handed 310
Helix 16	AB7	B	72	88	Right-handed alpha
Helix 17	AB8	B	98	102	Right-handed 310
Helix 18	AB9	B	106	112	Right-handed alpha
Helix 19	AC1	B	119	130	Right-handed alpha
Helix 20	AC2	B	131	143	Right-handed alpha
Helix 21	AC3	B	144	155	Right-handed alpha
Helix 22	AC4	B	165	170	Right-handed alpha
Helix 23	AC5	B	172	178	Right-handed 310
Helix 24	AC6	B	182	195	Right-handed alpha
Helix 25	AC7	B	200	214	Right-handed alpha
Helix 26	AC8	B	270	291	Right-handed alpha
Helix 27	AC9	C	25	38	Right-handed alpha
Helix 28	AD1	C	69	71	Right-handed 310
Helix 29	AD2	C	72	87	Right-handed alpha
Helix 30	AD3	C	98	102	Right-handed 310
Helix 31	AD4	C	106	112	Right-handed alpha
Helix 32	AD5	C	119	129	Right-handed alpha
Helix 33	AD6	C	131	143	Right-handed alpha
Helix 34	AD7	C	144	155	Right-handed alpha
Helix 35	AD8	C	165	170	Right-handed alpha
Helix 36	AD9	C	171	178	Right-handed 310
Helix 37	AE1	C	182	195	Right-handed alpha
Helix 38	AE2	C	200	214	Right-handed alpha
Helix 39	AE3	C	270	291	Right-handed alpha
Helix 40	AE4	D	25	38	Right-handed alpha
Helix 41	AE5	D	69	71	Right-handed 310
Helix 42	AE6	D	72	88	Right-handed alpha
Helix 43	AE7	D	98	102	Right-handed 310
Helix 44	AE8	D	106	112	Right-handed alpha
Helix 45	AE9	D	119	130	Right-handed alpha
Helix 46	AF1	D	131	143	Right-handed alpha
Helix 47	AF2	D	144	154	Right-handed alpha
Helix 48	AF3	D	165	170	Right-handed alpha
Helix 49	AF4	D	171	178	Right-handed 310
Helix 50	AF5	D	182	195	Right-handed alpha
Helix 51	AF6	D	200	214	Right-handed alpha
Helix 52	AF7	D	270	291	Right-handed alpha

There are 12 sheets in PDB entry 6NVT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	56	60	first strand
Strand 2	A	43	50	anti-parallel
Strand 3	A	257	267	anti-parallel
Strand 4	A	241	251	anti-parallel
Strand 5	A	231	237	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	66	67	first strand
Strand 2	A	180	181	anti-parallel
Strand 3	A	160	161	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	94	97	first strand
Strand 2	A	115	118	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	56	60	first strand
Strand 2	B	43	50	anti-parallel
Strand 3	B	257	267	anti-parallel
Strand 4	B	241	251	anti-parallel
Strand 5	B	231	237	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	66	67	first strand
Strand 2	B	180	181	anti-parallel
Strand 3	B	160	161	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	94	97	first strand
Strand 2	B	115	118	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	56	60	first strand
Strand 2	C	43	50	anti-parallel
Strand 3	C	257	267	anti-parallel
Strand 4	C	241	251	anti-parallel
Strand 5	C	231	237	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	66	67	first strand
Strand 2	C	180	181	anti-parallel
Strand 3	C	160	161	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	94	97	first strand
Strand 2	C	115	118	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	56	60	first strand
Strand 2	D	43	50	anti-parallel
Strand 3	D	257	267	anti-parallel
Strand 4	D	241	251	anti-parallel
Strand 5	D	231	237	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	66	67	first strand
Strand 2	D	180	181	anti-parallel
Strand 3	D	160	161	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	94	97	first strand
Strand 2	D	115	118	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6NVT

Analysis of interatomic Contacts of Structural Units in PDB entry:
6NVT