Analysis of interatomic Contacts of Structural Units in PDB entry:
6NVY

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6NVY entry

There are 2 chains in PDB entry 6NVY (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 7	GLU 197
B	SER 1	PHE 441

There are 58 helices in PDB entry 6NVY. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	25	54	Right-handed alpha
Helix 2	AA2	A	56	61	Right-handed alpha
Helix 3	AA3	A	64	74	Right-handed alpha
Helix 4	AA4	A	77	87	Right-handed alpha
Helix 5	AA5	A	89	112	Right-handed alpha
Helix 6	AA6	A	113	118	Right-handed alpha
Helix 7	AA7	A	119	126	Right-handed alpha
Helix 8	AA8	A	133	146	Right-handed alpha
Helix 9	AA9	A	147	149	Right-handed 310
Helix 10	AB1	A	152	169	Right-handed alpha
Helix 11	AB2	A	169	181	Right-handed alpha
Helix 12	AB3	A	193	197	Right-handed 310
Helix 13	AB4	B	8	11	Right-handed 310
Helix 14	AB5	B	150	164	Right-handed alpha
Helix 15	AB6	B	167	177	Right-handed alpha
Helix 16	AB7	B	226	230	Right-handed 310
Helix 17	AB8	B	254	261	Right-handed 310
Helix 18	AB9	B	267	276	Right-handed alpha
Helix 19	AC1	B	281	295	Right-handed alpha
Helix 20	AC2	B	298	313	Right-handed alpha
Helix 21	AC3	B	314	317	Right-handed 310
Helix 22	AC4	B	319	330	Right-handed alpha
Helix 23	AC5	B	346	364	Right-handed alpha
Helix 24	AC6	B	370	379	Right-handed alpha
Helix 25	AC7	B	384	393	Right-handed alpha
Helix 26	AC8	B	402	425	Right-handed alpha
Helix 27	AC9	B	428	433	Right-handed alpha
Helix 28	AD1	B	505	511	Right-handed alpha
Helix 29	AD2	B	520	527	Right-handed alpha
Helix 30	AD3	C	25	54	Right-handed alpha
Helix 31	AD4	C	56	61	Right-handed alpha
Helix 32	AD5	C	64	75	Right-handed alpha
Helix 33	AD6	C	77	87	Right-handed alpha
Helix 34	AD7	C	89	113	Right-handed alpha
Helix 35	AD8	C	113	118	Right-handed alpha
Helix 36	AD9	C	119	126	Right-handed alpha
Helix 37	AE1	C	133	146	Right-handed alpha
Helix 38	AE2	C	147	149	Right-handed 310
Helix 39	AE3	C	152	169	Right-handed alpha
Helix 40	AE4	C	169	181	Right-handed alpha
Helix 41	AE5	C	193	197	Right-handed 310
Helix 42	AE6	D	8	11	Right-handed 310
Helix 43	AE7	D	150	164	Right-handed alpha
Helix 44	AE8	D	166	177	Right-handed alpha
Helix 45	AE9	D	226	230	Right-handed 310
Helix 46	AF1	D	254	261	Right-handed 310
Helix 47	AF2	D	267	276	Right-handed alpha
Helix 48	AF3	D	281	295	Right-handed alpha
Helix 49	AF4	D	298	313	Right-handed alpha
Helix 50	AF5	D	314	317	Right-handed 310
Helix 51	AF6	D	319	330	Right-handed alpha
Helix 52	AF7	D	346	364	Right-handed alpha
Helix 53	AF8	D	370	379	Right-handed alpha
Helix 54	AF9	D	384	393	Right-handed alpha
Helix 55	AG1	D	402	425	Right-handed alpha
Helix 56	AG2	D	428	433	Right-handed alpha
Helix 57	AG3	D	505	511	Right-handed alpha
Helix 58	AG4	D	520	527	Right-handed alpha

There are 10 sheets in PDB entry 6NVY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	232	234	first strand
Strand 2	B	192	196	anti-parallel
Strand 3	B	181	187	anti-parallel
Strand 4	B	63	69	anti-parallel
Strand 5	B	57	60	anti-parallel
Strand 6	B	42	49	anti-parallel
Strand 7	B	32	39	anti-parallel
Strand 8	A	19	23	parallel
Strand 9	A	9	14	anti-parallel
Strand 10	B	528	532	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	240	243	first strand
Strand 2	B	2	6	anti-parallel
Strand 3	B	17	21	anti-parallel
Strand 4	B	468	474	anti-parallel
Strand 5	B	477	483	anti-parallel
Strand 6	B	515	516	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	95	98	first strand
Strand 2	B	86	92	anti-parallel
Strand 3	B	75	83	anti-parallel
Strand 4	B	139	145	anti-parallel
Strand 5	B	128	134	anti-parallel
Strand 6	B	115	125	anti-parallel
Strand 7	B	100	109	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	95	98	first strand
Strand 2	B	86	92	anti-parallel
Strand 3	B	75	83	anti-parallel
Strand 4	B	213	214	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	438	439	first strand
Strand 2	B	459	460	anti-parallel

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There are 10 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	232	234	first strand
Strand 2	D	192	196	anti-parallel
Strand 3	D	181	187	anti-parallel
Strand 4	D	63	69	anti-parallel
Strand 5	D	57	60	anti-parallel
Strand 6	D	42	49	anti-parallel
Strand 7	D	32	39	anti-parallel
Strand 8	C	19	22	parallel
Strand 9	C	8	14	anti-parallel
Strand 10	D	528	535	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	240	243	first strand
Strand 2	D	2	6	anti-parallel
Strand 3	D	17	21	anti-parallel
Strand 4	D	468	474	anti-parallel
Strand 5	D	477	483	anti-parallel
Strand 6	D	515	516	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	95	98	first strand
Strand 2	D	86	92	anti-parallel
Strand 3	D	75	83	anti-parallel
Strand 4	D	139	145	anti-parallel
Strand 5	D	128	134	anti-parallel
Strand 6	D	115	125	anti-parallel
Strand 7	D	100	109	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	95	98	first strand
Strand 2	D	86	92	anti-parallel
Strand 3	D	75	83	anti-parallel
Strand 4	D	213	214	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	438	439	first strand
Strand 2	D	459	460	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6NVY

Analysis of interatomic Contacts of Structural Units in PDB entry:
6NVY