Analysis of interatomic Contacts of Structural Units in PDB entry:
6NW9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6NW9 entry

There are 3 chains in PDB entry 6NW9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 12	VAL 627
B	SER 13	HIS 628
C	THR 12	HIS 630

There are 35 helices in PDB entry 6NW9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	12	26	Right-handed alpha
Helix 2	AA2	A	28	30	Right-handed 310
Helix 3	AA3	A	86	93	Right-handed alpha
Helix 4	AA4	A	154	168	Right-handed alpha
Helix 5	AA5	A	170	175	Right-handed alpha
Helix 6	AA6	A	193	198	Right-handed alpha
Helix 7	AA7	A	202	207	Right-handed 310
Helix 8	AA8	A	216	227	Right-handed alpha
Helix 9	AA9	A	284	288	Right-handed 310
Helix 10	AB1	A	452	455	Right-handed 310
Helix 11	AB2	A	587	591	Right-handed 310
Helix 12	AB3	B	14	26	Right-handed alpha
Helix 13	AB4	B	28	30	Right-handed 310
Helix 14	AB5	B	86	93	Right-handed alpha
Helix 15	AB6	B	139	143	Right-handed 310
Helix 16	AB7	B	154	169	Right-handed alpha
Helix 17	AB8	B	170	175	Right-handed alpha
Helix 18	AB9	B	193	198	Right-handed alpha
Helix 19	AC1	B	204	207	Right-handed 310
Helix 20	AC2	B	216	227	Right-handed alpha
Helix 21	AC3	B	284	288	Right-handed 310
Helix 22	AC4	B	452	455	Right-handed 310
Helix 23	AC5	B	566	570	Right-handed 310
Helix 24	AC6	B	587	591	Right-handed 310
Helix 25	AC7	C	13	26	Right-handed alpha
Helix 26	AC8	C	28	30	Right-handed 310
Helix 27	AC9	C	86	93	Right-handed alpha
Helix 28	AD1	C	154	168	Right-handed alpha
Helix 29	AD2	C	193	198	Right-handed alpha
Helix 30	AD3	C	202	207	Right-handed 310
Helix 31	AD4	C	216	227	Right-handed alpha
Helix 32	AD5	C	284	288	Right-handed 310
Helix 33	AD6	C	452	455	Right-handed 310
Helix 34	AD7	C	566	570	Right-handed 310
Helix 35	AD8	C	587	591	Right-handed 310

There are 32 sheets in PDB entry 6NW9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	32	34	first strand
Strand 2	A	46	49	parallel
Strand 3	A	54	57	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	68	71	first strand
Strand 2	A	76	79	anti-parallel
Strand 3	A	82	85	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	97	98	first strand
Strand 2	A	114	118	parallel
Strand 3	A	121	125	anti-parallel
Strand 4	A	150	153	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	107	109	first strand
Strand 2	A	131	133	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	176	178	first strand
Strand 2	A	190	192	anti-parallel

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There are 12 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	572	574	first strand
Strand 2	A	544	549	parallel
Strand 3	A	511	516	parallel
Strand 4	A	480	493	parallel
Strand 5	A	459	465	parallel
Strand 6	A	433	439	parallel
Strand 7	A	398	401	parallel
Strand 8	A	376	379	parallel
Strand 9	A	348	351	parallel
Strand 10	A	293	339	parallel
Strand 11	A	254	256	parallel
Strand 12	A	231	233	parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	239	242	first strand
Strand 2	A	263	266	parallel
Strand 3	A	293	339	parallel
Strand 4	A	254	256	parallel
Strand 5	A	231	233	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	289	290	first strand
Strand 2	A	293	339	parallel
Strand 3	A	276	279	parallel
Strand 4	A	247	248	parallel

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There are 12 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	552	553	first strand
Strand 2	A	519	521	parallel
Strand 3	A	496	498	parallel
Strand 4	A	473	475	parallel
Strand 5	A	447	450	parallel
Strand 6	A	424	428	parallel
Strand 7	A	390	392	parallel
Strand 8	A	370	372	parallel
Strand 9	A	342	344	parallel
Strand 10	A	293	339	parallel
Strand 11	A	361	367	parallel
Strand 12	A	381	382	parallel

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There are 12 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	247	248	first strand
Strand 2	A	276	279	parallel
Strand 3	A	293	339	parallel
Strand 4	A	361	367	parallel
Strand 5	A	384	387	parallel
Strand 6	A	418	421	parallel
Strand 7	A	442	444	parallel
Strand 8	A	468	470	parallel
Strand 9	A	480	493	parallel
Strand 10	A	503	508	parallel
Strand 11	A	534	538	parallel
Strand 12	A	559	562	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	585	586	first strand
Strand 2	A	600	603	parallel
Strand 3	A	608	613	anti-parallel
Strand 4	A	618	620	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	32	34	first strand
Strand 2	B	46	49	parallel
Strand 3	B	54	57	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	68	71	first strand
Strand 2	B	76	79	anti-parallel
Strand 3	B	83	85	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	97	98	first strand
Strand 2	B	114	118	parallel
Strand 3	B	121	125	anti-parallel
Strand 4	B	150	153	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	107	109	first strand
Strand 2	B	131	133	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	176	178	first strand
Strand 2	B	190	192	anti-parallel

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There are 13 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	572	574	first strand
Strand 2	B	544	549	parallel
Strand 3	B	511	516	parallel
Strand 4	B	480	493	parallel
Strand 5	B	468	470	parallel
Strand 6	B	442	444	parallel
Strand 7	B	418	421	parallel
Strand 8	B	384	387	parallel
Strand 9	B	361	367	parallel
Strand 10	B	293	339	parallel
Strand 11	B	254	256	parallel
Strand 12	B	231	233	parallel
Strand 13	B	201	202	parallel

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There are 11 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	559	562	first strand
Strand 2	B	534	538	parallel
Strand 3	B	503	508	parallel
Strand 4	B	480	493	parallel
Strand 5	B	459	465	parallel
Strand 6	B	433	439	parallel
Strand 7	B	398	401	parallel
Strand 8	B	376	379	parallel
Strand 9	B	348	351	parallel
Strand 10	B	263	266	first strand
Strand 11	B	239	241	parallel

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There are 12 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	381	382	first strand
Strand 2	B	361	367	parallel
Strand 3	B	293	339	parallel
Strand 4	B	342	344	parallel
Strand 5	B	370	372	parallel
Strand 6	B	390	392	parallel
Strand 7	B	424	428	parallel
Strand 8	B	447	450	parallel
Strand 9	B	473	475	parallel
Strand 10	B	496	498	parallel
Strand 11	B	519	521	parallel
Strand 12	B	552	553	parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	247	248	first strand
Strand 2	B	276	279	parallel
Strand 3	B	293	339	parallel
Strand 4	B	289	290	parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	585	586	first strand
Strand 2	B	600	603	parallel
Strand 3	B	608	613	anti-parallel
Strand 4	B	618	620	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	32	34	first strand
Strand 2	C	46	49	parallel
Strand 3	C	54	57	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	68	71	first strand
Strand 2	C	76	79	anti-parallel
Strand 3	C	82	85	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	97	98	first strand
Strand 2	C	114	118	parallel
Strand 3	C	121	125	anti-parallel
Strand 4	C	150	153	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	107	109	first strand
Strand 2	C	131	133	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	176	178	first strand
Strand 2	C	190	192	anti-parallel

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There are 12 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	572	574	first strand
Strand 2	C	544	549	parallel
Strand 3	C	511	516	parallel
Strand 4	C	480	493	parallel
Strand 5	C	459	465	parallel
Strand 6	C	433	439	parallel
Strand 7	C	398	401	parallel
Strand 8	C	376	379	parallel
Strand 9	C	348	351	parallel
Strand 10	C	293	339	parallel
Strand 11	C	254	256	parallel
Strand 12	C	231	233	parallel

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There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	239	241	first strand
Strand 2	C	263	266	parallel
Strand 3	C	293	339	parallel
Strand 4	C	254	256	parallel
Strand 5	C	231	233	parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	289	290	first strand
Strand 2	C	293	339	parallel
Strand 3	C	276	279	parallel
Strand 4	C	247	248	parallel

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There are 12 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	552	553	first strand
Strand 2	C	519	521	parallel
Strand 3	C	496	498	parallel
Strand 4	C	473	475	parallel
Strand 5	C	447	450	parallel
Strand 6	C	424	428	parallel
Strand 7	C	390	392	parallel
Strand 8	C	370	372	parallel
Strand 9	C	342	344	parallel
Strand 10	C	293	339	parallel
Strand 11	C	361	367	parallel
Strand 12	C	381	382	parallel

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There are 12 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	247	248	first strand
Strand 2	C	276	279	parallel
Strand 3	C	293	339	parallel
Strand 4	C	361	367	parallel
Strand 5	C	384	387	parallel
Strand 6	C	418	421	parallel
Strand 7	C	442	444	parallel
Strand 8	C	468	470	parallel
Strand 9	C	480	493	parallel
Strand 10	C	503	508	parallel
Strand 11	C	534	538	parallel
Strand 12	C	559	562	parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	585	586	first strand
Strand 2	C	600	603	parallel
Strand 3	C	608	613	anti-parallel
Strand 4	C	618	620	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6NW9

Analysis of interatomic Contacts of Structural Units in PDB entry:
6NW9