Analysis of interatomic Contacts of Structural Units in PDB entry:
6NXF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6NXF entry

There are 4 chains in PDB entry 6NXF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 12GLU 147
B
 VAL 17PRO 148
V
 GLU 1810TRP 1857
U
 MSE 1812TRP 1857
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 6NXF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
124 141Right-handed alpha
Helix 2
AA2
B
124 141Right-handed alpha
Helix 3
AA3
V
1818 1820Right-handed 310
Helix 4
AA4
V
1828 1832Right-handed 310
Helix 5
AA5
V
1834 1847Right-handed alpha
Helix 6
AA6
V
1848 1851Right-handed 310
Helix 7
AA7
U
1816 1820Right-handed 310
Helix 8
AA8
U
1828 1832Right-handed 310
Helix 9
AA9
U
1834 1846Right-handed alpha
Helix 10
AB1
U
1851 1856Right-handed alpha
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There are 3 sheets in PDB entry 6NXF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
145 146first strand
Strand 2
A
94 99parallel
Strand 3
A
102 107anti-parallel
Strand 4
A
114 120anti-parallel
Strand 5
A
17 34anti-parallel
Strand 6
A
63 68anti-parallel
Strand 7
A
72 77anti-parallel
Strand 8
A
80 86anti-parallel
Strand 9
U
1823 1824parallel
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There are 12 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
145 146first strand
Strand 2
B
94 99parallel
Strand 3
B
102 109anti-parallel
Strand 4
B
112 120anti-parallel
Strand 5
B
18 31anti-parallel
Strand 6
B
63 67anti-parallel
Strand 7
B
72 77anti-parallel
Strand 8
B
80 86anti-parallel
Strand 9
V
1823 1825parallel
Strand 10
A
17 34parallel
Strand 11
A
48 55anti-parallel
Strand 12
V
1814 1816parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
48 55first strand
Strand 2
B
18 31anti-parallel
Strand 3
B
63 67anti-parallel
Strand 4
B
72 77anti-parallel
Strand 5
B
80 86anti-parallel
Strand 6
V
1823 1825parallel
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