Analysis of interatomic Contacts of Structural Units in PDB entry:
6NXJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6NXJ entry

There are 2 chains in PDB entry 6NXJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 21LEU 332
B
 ALA 21LEU 332
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 6NXJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
47 67Right-handed alpha
Helix 2
AA2
A
73 81Right-handed alpha
Helix 3
AA3
A
90 107Right-handed alpha
Helix 4
AA4
A
112 114Right-handed 310
Helix 5
AA5
A
115 122Right-handed alpha
Helix 6
AA6
A
135 144Right-handed alpha
Helix 7
AA7
A
145 146Right-handed 310
Helix 8
AA8
A
147 149Right-handed 310
Helix 9
AA9
A
172 188Right-handed alpha
Helix 10
AB1
A
243 249Right-handed 310
Helix 11
AB2
A
280 295Right-handed alpha
Helix 12
AB3
A
295 306Right-handed alpha
Helix 13
AB4
A
328 332Right-handed 310
Helix 14
AB5
B
47 67Right-handed alpha
Helix 15
AB6
B
73 81Right-handed alpha
Helix 16
AB7
B
90 107Right-handed alpha
Helix 17
AB8
B
112 114Right-handed 310
Helix 18
AB9
B
115 122Right-handed alpha
Helix 19
AC1
B
135 144Right-handed alpha
Helix 20
AC2
B
145 146Right-handed 310
Helix 21
AC3
B
147 149Right-handed 310
Helix 22
AC4
B
172 188Right-handed alpha
Helix 23
AC5
B
280 307Right-handed alpha
Helix 24
AC6
B
326 332Right-handed 310
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There are 7 sheets in PDB entry 6NXJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
23 30first strand
Strand 2
A
33 40anti-parallel
Strand 3
A
193 197anti-parallel
Strand 4
A
200 204anti-parallel
Strand 5
A
236 241anti-parallel
Strand 6
A
271 278anti-parallel
Strand 7
A
310 315anti-parallel
Strand 8
A
320 324anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
87 88first strand
Strand 2
A
157 160anti-parallel
Strand 3
A
151 153anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
215 219first strand
Strand 2
A
227 231anti-parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
23 30first strand
Strand 2
B
33 40anti-parallel
Strand 3
B
193 197anti-parallel
Strand 4
B
200 204anti-parallel
Strand 5
B
237 241anti-parallel
Strand 6
B
271 278anti-parallel
Strand 7
B
310 316anti-parallel
Strand 8
B
319 324anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
87 88first strand
Strand 2
B
157 160anti-parallel
Strand 3
B
151 154anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
215 218first strand
Strand 2
B
228 231anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
259 260first strand
Strand 2
B
265 266anti-parallel
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