Analysis of interatomic Contacts of Structural Units in PDB entry:
6NY1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6NY1 entry

There are 4 chains in PDB entry 6NY1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
Y
 GLU 2LYS 983
D
 C 1 A 17
B
 G 1 A 120
C
 T 2 G 30
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 6NY1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
Y
4 15Right-handed alpha
Helix 2
AA2
Y
37 44Right-handed alpha
Helix 3
AA3
Y
59 88Right-handed alpha
Helix 4
AA4
Y
90 98Right-handed alpha
Helix 5
AA5
Y
194 198Right-handed 310
Helix 6
AA6
Y
222 260Right-handed alpha
Helix 7
AA7
Y
262 267Right-handed alpha
Helix 8
AA8
Y
287 309Right-handed alpha
Helix 9
AA9
Y
342 357Right-handed alpha
Helix 10
AB1
Y
361 366Right-handed alpha
Helix 11
AB2
Y
370 380Right-handed alpha
Helix 12
AB3
Y
403 418Right-handed alpha
Helix 13
AB4
Y
424 449Right-handed alpha
Helix 14
AB5
Y
456 473Right-handed alpha
Helix 15
AB6
Y
474 476Right-handed 310
Helix 16
AB7
Y
483 501Right-handed alpha
Helix 17
AB8
Y
502 504Right-handed 310
Helix 18
AB9
Y
602 610Right-handed alpha
Helix 19
AC1
Y
711 728Right-handed alpha
Helix 20
AC2
Y
737 761Right-handed alpha
Helix 21
AC3
Y
790 802Right-handed alpha
Helix 22
AC4
Y
886 892Right-handed alpha
Helix 23
AC5
Y
897 903Right-handed alpha
Helix 24
AC6
Y
906 914Right-handed alpha
Helix 25
AC7
Y
935 938Right-handed 310
Helix 26
AC8
Y
939 951Right-handed alpha
Helix 27
AC9
Y
965 978Right-handed alpha
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There are 5 sheets in PDB entry 6NY1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Y
18 19first strand
Strand 2
Y
657 658anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Y
27 29first strand
Strand 2
Y
650 654anti-parallel
Strand 3
Y
622 633anti-parallel
Strand 4
Y
509 515anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Y
27 29first strand
Strand 2
Y
650 654anti-parallel
Strand 3
Y
622 633anti-parallel
Strand 4
Y
644 647anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Y
530 532first strand
Strand 2
Y
545 548anti-parallel
Strand 3
Y
595 598anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Y
680 682first strand
Strand 2
Y
669 672anti-parallel
Strand 3
Y
766 767parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il