Analysis of interatomic Contacts of Structural Units in PDB entry:
6NY2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6NY2 entry

There are 4 chains in PDB entry 6NY2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 T -4 G 30
D
 C 1 A 35
Y
 GLU 2LYS 983
B
 G 1 A 122
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 6NY2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
Y
4 13Right-handed alpha
Helix 2
AA2
Y
37 42Right-handed alpha
Helix 3
AA3
Y
60 88Right-handed alpha
Helix 4
AA4
Y
90 98Right-handed alpha
Helix 5
AA5
Y
194 198Right-handed 310
Helix 6
AA6
Y
209 214Right-handed alpha
Helix 7
AA7
Y
222 259Right-handed alpha
Helix 8
AA8
Y
262 271Right-handed alpha
Helix 9
AA9
Y
287 308Right-handed alpha
Helix 10
AB1
Y
342 357Right-handed alpha
Helix 11
AB2
Y
357 366Right-handed alpha
Helix 12
AB3
Y
370 380Right-handed alpha
Helix 13
AB4
Y
405 418Right-handed alpha
Helix 14
AB5
Y
424 449Right-handed alpha
Helix 15
AB6
Y
456 473Right-handed alpha
Helix 16
AB7
Y
474 476Right-handed 310
Helix 17
AB8
Y
483 501Right-handed alpha
Helix 18
AB9
Y
602 610Right-handed alpha
Helix 19
AC1
Y
711 728Right-handed alpha
Helix 20
AC2
Y
738 762Right-handed alpha
Helix 21
AC3
Y
788 802Right-handed alpha
Helix 22
AC4
Y
886 893Right-handed alpha
Helix 23
AC5
Y
897 903Right-handed alpha
Helix 24
AC6
Y
906 914Right-handed alpha
Helix 25
AC7
Y
935 950Right-handed alpha
Helix 26
AC8
Y
965 981Right-handed alpha
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There are 7 sheets in PDB entry 6NY2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Y
18 20first strand
Strand 2
Y
656 658anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Y
27 29first strand
Strand 2
Y
650 654anti-parallel
Strand 3
Y
622 631anti-parallel
Strand 4
Y
510 514anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Y
33 34first strand
Strand 2
Y
595 600anti-parallel
Strand 3
Y
545 548anti-parallel
Strand 4
Y
530 532anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Y
557 558first strand
Strand 2
Y
585 586anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Y
633 634first strand
Strand 2
Y
643 644anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Y
669 670first strand
Strand 2
Y
766 769parallel
Strand 3
Y
811 814parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Y
923 924first strand
Strand 2
Y
931 932anti-parallel
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