Analysis of interatomic Contacts of Structural Units in PDB entry:
6NY3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6NY3 entry

There are 4 chains in PDB entry 6NY3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 T 1 G 30
D
 C 1 C 24
Y
 GLU 2LYS 983
B
 G 1 A 122
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 6NY3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
Y
4 13Right-handed alpha
Helix 2
AA2
Y
37 42Right-handed alpha
Helix 3
AA3
Y
60 88Right-handed alpha
Helix 4
AA4
Y
90 98Right-handed alpha
Helix 5
AA5
Y
222 260Right-handed alpha
Helix 6
AA6
Y
262 271Right-handed alpha
Helix 7
AA7
Y
287 308Right-handed alpha
Helix 8
AA8
Y
343 357Right-handed alpha
Helix 9
AA9
Y
361 366Right-handed alpha
Helix 10
AB1
Y
371 380Right-handed alpha
Helix 11
AB2
Y
404 417Right-handed alpha
Helix 12
AB3
Y
423 429Right-handed alpha
Helix 13
AB4
Y
433 448Right-handed alpha
Helix 14
AB5
Y
458 473Right-handed alpha
Helix 15
AB6
Y
475 480Right-handed alpha
Helix 16
AB7
Y
481 501Right-handed alpha
Helix 17
AB8
Y
502 504Right-handed 310
Helix 18
AB9
Y
602 610Right-handed alpha
Helix 19
AC1
Y
711 728Right-handed alpha
Helix 20
AC2
Y
738 762Right-handed alpha
Helix 21
AC3
Y
783 787Right-handed 310
Helix 22
AC4
Y
790 802Right-handed alpha
Helix 23
AC5
Y
886 892Right-handed alpha
Helix 24
AC6
Y
897 904Right-handed alpha
Helix 25
AC7
Y
906 914Right-handed alpha
Helix 26
AC8
Y
945 950Right-handed alpha
Helix 27
AC9
Y
965 978Right-handed alpha
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There are 7 sheets in PDB entry 6NY3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Y
18 19first strand
Strand 2
Y
657 658anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Y
27 29first strand
Strand 2
Y
651 654anti-parallel
Strand 3
Y
622 633anti-parallel
Strand 4
Y
510 514anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Y
27 29first strand
Strand 2
Y
651 654anti-parallel
Strand 3
Y
622 633anti-parallel
Strand 4
Y
644 647anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Y
33 34first strand
Strand 2
Y
595 600anti-parallel
Strand 3
Y
545 548anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Y
518 519first strand
Strand 2
Y
526 527anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Y
557 558first strand
Strand 2
Y
585 586anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Y
669 670first strand
Strand 2
Y
766 769parallel
Strand 3
Y
811 814parallel
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