Analysis of interatomic Contacts of Structural Units in PDB entry:
6NY5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6NY5 entry

There are 3 chains in PDB entry 6NY5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 97SER 482
B
 SER 97VAL 478
C
 U -1 U 12
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 58 helices in PDB entry 6NY5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
97 105Right-handed alpha
Helix 2
AA2
A
109 114Right-handed alpha
Helix 3
AA3
A
114 124Right-handed alpha
Helix 4
AA4
A
130 144Right-handed alpha
Helix 5
AA5
A
160 177Right-handed alpha
Helix 6
AA6
A
181 192Right-handed alpha
Helix 7
AA7
A
195 200Right-handed alpha
Helix 8
AA8
A
204 216Right-handed alpha
Helix 9
AA9
A
217 229Right-handed alpha
Helix 10
AB1
A
231 237Right-handed alpha
Helix 11
AB2
A
240 251Right-handed alpha
Helix 12
AB3
A
254 266Right-handed alpha
Helix 13
AB4
A
268 275Right-handed alpha
Helix 14
AB5
A
277 285Right-handed alpha
Helix 15
AB6
A
286 289Right-handed 310
Helix 16
AB7
A
293 303Right-handed alpha
Helix 17
AB8
A
303 309Right-handed alpha
Helix 18
AB9
A
310 323Right-handed alpha
Helix 19
AC1
A
327 340Right-handed alpha
Helix 20
AC2
A
341 346Right-handed alpha
Helix 21
AC3
A
348 360Right-handed alpha
Helix 22
AC4
A
366 376Right-handed alpha
Helix 23
AC5
A
378 383Right-handed alpha
Helix 24
AC6
A
387 398Right-handed alpha
Helix 25
AC7
A
401 414Right-handed alpha
Helix 26
AC8
A
415 417Right-handed 310
Helix 27
AC9
A
418 427Right-handed alpha
Helix 28
AD1
A
430 440Right-handed alpha
Helix 29
AD2
A
446 464Right-handed alpha
Helix 30
AD3
A
471 477Right-handed alpha
Helix 31
AD4
B
98 105Right-handed alpha
Helix 32
AD5
B
109 114Right-handed alpha
Helix 33
AD6
B
114 125Right-handed alpha
Helix 34
AD7
B
130 144Right-handed alpha
Helix 35
AD8
B
164 177Right-handed alpha
Helix 36
AD9
B
181 191Right-handed alpha
Helix 37
AE1
B
195 201Right-handed alpha
Helix 38
AE2
B
204 216Right-handed alpha
Helix 39
AE3
B
217 237Right-handed alpha
Helix 40
AE4
B
240 251Right-handed alpha
Helix 41
AE5
B
254 266Right-handed alpha
Helix 42
AE6
B
268 274Right-handed alpha
Helix 43
AE7
B
277 285Right-handed alpha
Helix 44
AE8
B
286 289Right-handed 310
Helix 45
AE9
B
293 303Right-handed alpha
Helix 46
AF1
B
303 309Right-handed alpha
Helix 47
AF2
B
310 322Right-handed alpha
Helix 48
AF3
B
327 341Right-handed alpha
Helix 49
AF4
B
341 346Right-handed alpha
Helix 50
AF5
B
348 360Right-handed alpha
Helix 51
AF6
B
366 376Right-handed alpha
Helix 52
AF7
B
378 383Right-handed alpha
Helix 53
AF8
B
387 398Right-handed alpha
Helix 54
AF9
B
401 414Right-handed alpha
Helix 55
AG1
B
418 427Right-handed alpha
Helix 56
AG2
B
430 440Right-handed alpha
Helix 57
AG3
B
446 464Right-handed alpha
Helix 58
AG4
B
471 478Right-handed alpha
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There are no sheets in PDB entry 6NY5
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il