Analysis of interatomic Contacts of Structural Units in PDB entry:
6NY9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6NY9 entry

There is 1 chain in PDB entry 6NY9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 ALA 1SER 250
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 6NY9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
38 52Right-handed alpha
Helix 2
AA2
B
69 73Right-handed 310
Helix 3
AA3
B
74 89Right-handed alpha
Helix 4
AA4
B
100 113Right-handed alpha
Helix 5
AA5
B
130 137Right-handed alpha
Helix 6
AA6
B
138 149Right-handed alpha
Helix 7
AA7
B
154 159Right-handed alpha
Helix 8
AA8
B
167 174Right-handed alpha
Helix 9
AA9
B
175 177Right-handed 310
Helix 10
AB1
B
202 212Right-handed alpha
Helix 11
AB2
B
231 250Right-handed alpha
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There are 2 sheets in PDB entry 6NY9. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 6first strand
Strand 2
B
14 19anti-parallel
Strand 3
B
53 58anti-parallel
Strand 4
B
22 29parallel
Strand 5
B
94 99parallel
Strand 6
B
117 123parallel
Strand 7
B
189 194parallel
Strand 8
B
217 222parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
150 152first strand
Strand 2
B
164 166anti-parallel
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