Analysis of interatomic Contacts of Structural Units in PDB entry:
6NYB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6NYB entry


Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 6 chains in PDB entry 6NYB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 233SER 364
A
 ALA 366ALA 728
A
 GLU 730PHE 738
B
 GLN 56GLN 383
C
 ASP 2SER 230
D
 ASP 2SER 230
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 46 helices in PDB entry 6NYB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
491 506Right-handed alpha
Helix 2
AA2
A
536 543Right-handed alpha
Helix 3
AA3
A
549 570Right-handed alpha
Helix 4
AA4
A
586 588Right-handed 310
Helix 5
AA5
A
621 627Right-handed alpha
Helix 6
AA6
A
634 652Right-handed alpha
Helix 7
AA7
A
662 671Right-handed alpha
Helix 8
AA8
A
686 697Right-handed alpha
Helix 9
AA9
A
700 704Right-handed 310
Helix 10
AB1
A
706 719Right-handed alpha
Helix 11
AB2
A
722 726Right-handed 310
Helix 12
AB3
B
56 60Right-handed 310
Helix 13
AB4
B
64 66Right-handed 310
Helix 14
AB5
B
104 116Right-handed alpha
Helix 15
AB6
B
117 121Right-handed 310
Helix 16
AB7
B
150 159Right-handed alpha
Helix 17
AB8
B
162 184Right-handed alpha
Helix 18
AB9
B
192 194Right-handed 310
Helix 19
AC1
B
212 223Right-handed alpha
Helix 20
AC2
B
231 236Right-handed alpha
Helix 21
AC3
B
242 259Right-handed alpha
Helix 22
AC4
B
309 320Right-handed alpha
Helix 23
AC5
B
331 342Right-handed alpha
Helix 24
AC6
B
351 357Right-handed alpha
Helix 25
AC7
B
358 367Right-handed alpha
Helix 26
AC8
B
370 380Right-handed alpha
Helix 27
AC9
C
3 16Right-handed alpha
Helix 28
AD1
C
20 32Right-handed alpha
Helix 29
AD2
C
38 70Right-handed alpha
Helix 30
AD3
C
73 102Right-handed alpha
Helix 31
AD4
C
111 131Right-handed alpha
Helix 32
AD5
C
137 160Right-handed alpha
Helix 33
AD6
C
164 181Right-handed alpha
Helix 34
AD7
C
184 202Right-handed alpha
Helix 35
AD8
C
207 210Right-handed 310
Helix 36
AD9
C
211 229Right-handed alpha
Helix 37
AE1
D
3 16Right-handed alpha
Helix 38
AE2
D
19 31Right-handed alpha
Helix 39
AE3
D
37 67Right-handed alpha
Helix 40
AE4
D
74 89Right-handed alpha
Helix 41
AE5
D
90 104Right-handed alpha
Helix 42
AE6
D
111 133Right-handed alpha
Helix 43
AE7
D
135 160Right-handed alpha
Helix 44
AE8
D
164 181Right-handed alpha
Helix 45
AE9
D
184 202Right-handed alpha
Helix 46
AF1
D
212 230Right-handed alpha
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There are 5 sheets in PDB entry 6NYB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
237 240first strand
Strand 2
A
258 261anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
458 465first strand
Strand 2
A
469 475anti-parallel
Strand 3
A
479 485anti-parallel
Strand 4
A
527 530anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
582 585first strand
Strand 2
A
589 592anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
68 75first strand
Strand 2
B
81 87anti-parallel
Strand 3
B
93 99anti-parallel
Strand 4
B
138 144anti-parallel
Strand 5
B
129 135anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
196 198first strand
Strand 2
B
204 206anti-parallel
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