Analysis of interatomic Contacts of Structural Units in PDB entry:
6NYP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6NYP entry

There are 8 chains in PDB entry 6NYP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 CYS 34ASP 135
B
 ASP 35ASP 135
C
 CYS 34LYS 137
D
 SER 33ASP 135
E
 GLU 21ASN 92
F
 ILE 22LYS 98
G
 ILE 22CYS 95
H
 ILE 22LYS 98
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 5 helices in PDB entry 6NYP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
106 110Right-handed 310
Helix 2
AA2
B
106 110Right-handed 310
Helix 3
AA3
C
106 110Right-handed 310
Helix 4
AA4
D
83 85Right-handed 310
Helix 5
AA5
D
106 110Right-handed 310
Back to top of page

There are 22 sheets in PDB entry 6NYP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
37 38first strand
Strand 2
A
54 61anti-parallel
Strand 3
A
96 102anti-parallel
Strand 4
A
87 91anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
45 49first strand
Strand 2
A
129 134parallel
Strand 3
A
111 119anti-parallel
Strand 4
A
68 75anti-parallel
Strand 5
A
78 81anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
45 49first strand
Strand 2
A
129 134parallel
Strand 3
A
111 119anti-parallel
Strand 4
A
122 125anti-parallel
Strand 5
F
54 58anti-parallel
Strand 6
F
42 46anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
37 38first strand
Strand 2
B
54 61anti-parallel
Strand 3
B
96 102anti-parallel
Strand 4
B
87 91anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
45 49first strand
Strand 2
B
129 134parallel
Strand 3
B
111 119anti-parallel
Strand 4
B
68 74anti-parallel
Strand 5
B
79 81anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
45 49first strand
Strand 2
B
129 134parallel
Strand 3
B
111 119anti-parallel
Strand 4
B
122 125anti-parallel
Strand 5
H
54 58anti-parallel
Strand 6
H
42 46anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
37 38first strand
Strand 2
C
54 61anti-parallel
Strand 3
C
96 102anti-parallel
Strand 4
C
87 91anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
45 49first strand
Strand 2
C
129 134parallel
Strand 3
C
111 119anti-parallel
Strand 4
C
68 75anti-parallel
Strand 5
C
78 81anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
45 49first strand
Strand 2
C
129 134parallel
Strand 3
C
111 119anti-parallel
Strand 4
C
122 125anti-parallel
Strand 5
G
54 58anti-parallel
Strand 6
G
42 46anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
37 38first strand
Strand 2
D
54 61anti-parallel
Strand 3
D
96 102anti-parallel
Strand 4
D
87 91anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
45 49first strand
Strand 2
D
129 134parallel
Strand 3
D
111 119anti-parallel
Strand 4
D
68 75anti-parallel
Strand 5
D
78 81anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
45 49first strand
Strand 2
D
129 134parallel
Strand 3
D
111 119anti-parallel
Strand 4
D
122 125anti-parallel
Strand 5
E
54 58anti-parallel
Strand 6
E
42 46anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
28 29first strand
Strand 2
E
34 35anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
63 65first strand
Strand 2
E
71 73anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
28 29first strand
Strand 2
F
34 35anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
63 65first strand
Strand 2
F
71 73anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
82 85first strand
Strand 2
F
94 96anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
28 29first strand
Strand 2
G
34 35anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
63 66first strand
Strand 2
G
70 73anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
28 30first strand
Strand 2
H
33 35anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
63 65first strand
Strand 2
H
71 73anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
82 85first strand
Strand 2
H
94 96anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il