Analysis of interatomic Contacts of Structural Units in PDB entry:
6NYR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6NYR entry

There is 1 chain in PDB entry 6NYR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LEU 623
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 6NYR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
24 29Right-handed alpha
Helix 2
AA2
A
88 94Right-handed alpha
Helix 3
AA3
A
658 663Right-handed alpha
Helix 4
AA4
B
24 29Right-handed alpha
Helix 5
AA5
B
88 94Right-handed alpha
Helix 6
AA6
B
658 663Right-handed alpha
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There are 2 sheets in PDB entry 6NYR. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 32 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 7first strand
Strand 2
A
10 12anti-parallel
Strand 3
A
35 37parallel
Strand 4
A
56 58parallel
Strand 5
A
78 80parallel
Strand 6
A
101 103parallel
Strand 7
A
123 125parallel
Strand 8
A
145 147parallel
Strand 9
A
167 169parallel
Strand 10
A
189 191parallel
Strand 11
A
211 213parallel
Strand 12
A
233 235parallel
Strand 13
A
255 257parallel
Strand 14
A
277 279parallel
Strand 15
A
299 301parallel
Strand 16
A
321 323parallel
Strand 17
A
343 345parallel
Strand 18
A
365 367parallel
Strand 19
A
387 389parallel
Strand 20
A
409 411parallel
Strand 21
A
431 433parallel
Strand 22
A
453 455parallel
Strand 23
A
475 477parallel
Strand 24
A
497 499parallel
Strand 25
A
519 521parallel
Strand 26
A
541 543parallel
Strand 27
A
563 565parallel
Strand 28
A
585 587parallel
Strand 29
A
607 609parallel
Strand 30
A
629 631parallel
Strand 31
A
651 655parallel
Strand 32
A
674 678parallel
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There are 32 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 7first strand
Strand 2
B
10 13anti-parallel
Strand 3
B
35 37parallel
Strand 4
B
56 58parallel
Strand 5
B
78 80parallel
Strand 6
B
101 103parallel
Strand 7
B
123 125parallel
Strand 8
B
145 147parallel
Strand 9
B
167 169parallel
Strand 10
B
189 191parallel
Strand 11
B
211 213parallel
Strand 12
B
233 235parallel
Strand 13
B
255 257parallel
Strand 14
B
277 279parallel
Strand 15
B
299 301parallel
Strand 16
B
321 323parallel
Strand 17
B
343 345parallel
Strand 18
B
365 367parallel
Strand 19
B
387 389parallel
Strand 20
B
409 411parallel
Strand 21
B
431 433parallel
Strand 22
B
453 455parallel
Strand 23
B
475 477parallel
Strand 24
B
497 499parallel
Strand 25
B
519 521parallel
Strand 26
B
541 543parallel
Strand 27
B
563 565parallel
Strand 28
B
585 587parallel
Strand 29
B
607 609parallel
Strand 30
B
629 631parallel
Strand 31
B
651 655parallel
Strand 32
B
674 678parallel
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