Analysis of interatomic Contacts of Structural Units in PDB entry:
6NYV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6NYV entry

There is 1 chain in PDB entry 6NYV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 GLY 460ASP 755
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 6NYV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
460 473Right-handed alpha
Helix 2
AA2
B
481 485Right-handed 310
Helix 3
AA3
B
488 499Right-handed alpha
Helix 4
AA4
B
499 505Right-handed alpha
Helix 5
AA5
B
506 509Right-handed 310
Helix 6
AA6
B
510 514Right-handed 310
Helix 7
AA7
B
528 540Right-handed alpha
Helix 8
AA8
B
549 553Right-handed alpha
Helix 9
AA9
B
560 574Right-handed alpha
Helix 10
AB1
B
583 588Right-handed alpha
Helix 11
AB2
B
599 612Right-handed alpha
Helix 12
AB3
B
630 634Right-handed 310
Helix 13
AB4
B
635 642Right-handed alpha
Helix 14
AB5
B
652 666Right-handed alpha
Helix 15
AB6
B
672 682Right-handed alpha
Helix 16
AB7
B
687 699Right-handed alpha
Helix 17
AB8
B
700 705Right-handed alpha
Helix 18
AB9
B
707 714Right-handed alpha
Helix 19
AC1
B
723 734Right-handed alpha
Helix 20
AC2
B
739 754Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 6NYV.

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
543 548first strand
Strand 2
B
577 582parallel
Strand 3
B
622 628parallel
Strand 4
B
518 522parallel
Strand 5
B
644 647parallel
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