Analysis of interatomic Contacts of Structural Units in PDB entry:
6NYX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6NYX entry

There are 18 chains in PDB entry 6NYX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 141SER 186
B
 GLN 139SER 186
C
 ALA 140ILE 187
D
 ARG 141ARG 189
E
 ARG 141ALA 188
F
 GLN 139ILE 187
G
 ALA 450ILE 484
H
 ALA 140ARG 189
I
 ALA 450ILE 484
J
 SER 142ARG 189
K
 ALA 443ILE 477
L
 GLN 139SER 186
M
 LEU 451ILE 484
N
 LEU 451ILE 484
O
 LEU 451ILE 484
P
 LEU 451ILE 484
Q
 ALA 450ILE 484
T
 LEU 451ILE 484
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 6NYX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
141 183Right-handed alpha
Helix 2
AA2
B
140 183Right-handed alpha
Helix 3
AA3
C
141 182Right-handed alpha
Helix 4
AA4
C
182 187Right-handed alpha
Helix 5
AA5
D
142 182Right-handed alpha
Helix 6
AA6
D
182 189Right-handed alpha
Helix 7
AA7
E
142 183Right-handed alpha
Helix 8
AA8
E
183 188Right-handed alpha
Helix 9
AA9
F
140 187Right-handed alpha
Helix 10
AB1
G
456 484Right-handed alpha
Helix 11
AB2
H
141 182Right-handed alpha
Helix 12
AB3
H
182 189Right-handed alpha
Helix 13
AB4
I
456 483Right-handed alpha
Helix 14
AB5
J
143 182Right-handed alpha
Helix 15
AB6
J
182 189Right-handed alpha
Helix 16
AB7
K
449 476Right-handed alpha
Helix 17
AB8
L
140 183Right-handed alpha
Helix 18
AB9
M
456 483Right-handed alpha
Helix 19
AC1
N
456 483Right-handed alpha
Helix 20
AC2
O
456 483Right-handed alpha
Helix 21
AC3
P
456 483Right-handed alpha
Helix 22
AC4
Q
456 483Right-handed alpha
Helix 23
AC5
T
456 483Right-handed alpha
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There are no sheets in PDB entry 6NYX
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il