Analysis of interatomic Contacts of Structural Units in PDB entry:
6NZS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6NZS entry

There is 1 chain in PDB entry 6NZS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 52THR 638
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 8 helices in PDB entry 6NZS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
110 115Right-handed 310
Helix 2
AA2
A
126 133Right-handed alpha
Helix 3
AA3
A
161 163Right-handed 310
Helix 4
AA4
A
246 254Right-handed alpha
Helix 5
AA5
A
272 276Right-handed 310
Helix 6
AA6
A
345 349Right-handed 310
Helix 7
AA7
A
565 570Right-handed 310
Helix 8
AA8
A
626 631Right-handed 310
Back to top of page

There are 9 sheets in PDB entry 6NZS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
61 62first strand
Strand 2
A
135 143anti-parallel
Strand 3
A
107 109anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
61 62first strand
Strand 2
A
135 143anti-parallel
Strand 3
A
235 243parallel
Strand 4
A
195 201anti-parallel
Strand 5
A
165 168anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
69 71first strand
Strand 2
A
82 84parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
102 104first strand
Strand 2
A
88 94anti-parallel
Strand 3
A
147 153anti-parallel
Strand 4
A
183 188anti-parallel
Strand 5
A
176 180anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
219 220first strand
Strand 2
A
205 210anti-parallel
Strand 3
A
227 233anti-parallel
Back to list of sheets
Back to top of page

There are 13 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
262 263first strand
Strand 2
A
280 283parallel
Strand 3
A
304 307parallel
Strand 4
A
326 330parallel
Strand 5
A
376 381parallel
Strand 6
A
402 407parallel
Strand 7
A
428 437parallel
Strand 8
A
449 458parallel
Strand 9
A
474 486parallel
Strand 10
A
517 536parallel
Strand 11
A
546 561parallel
Strand 12
A
602 603parallel
Strand 13
A
606 607anti-parallel
Back to list of sheets
Back to top of page

There are 13 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
268 269first strand
Strand 2
A
286 289parallel
Strand 3
A
311 314parallel
Strand 4
A
334 336parallel
Strand 5
A
384 386parallel
Strand 6
A
410 412parallel
Strand 7
A
428 437parallel
Strand 8
A
449 458parallel
Strand 9
A
474 486parallel
Strand 10
A
517 536parallel
Strand 11
A
546 561parallel
Strand 12
A
596 599parallel
Strand 13
A
633 636parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
296 298first strand
Strand 2
A
317 319parallel
Strand 3
A
367 371parallel
Strand 4
A
393 397parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
422 423first strand
Strand 2
A
442 443parallel
Strand 3
A
465 466parallel
Strand 4
A
501 503parallel
Strand 5
A
540 544parallel
Strand 6
A
572 575parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il