Analysis of interatomic Contacts of Structural Units in PDB entry:
6O06


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6O06 entry

There are 3 chains in PDB entry 6O06 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 55THR 280
B
 ARG 5GLN 254
C
 PRO 3PHE 237
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 6O06. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
63 68Right-handed alpha
Helix 2
AA2
A
100 107Right-handed alpha
Helix 3
AA3
B
28 30Right-handed 310
Helix 4
AA4
B
86 90Right-handed 310
Helix 5
AA5
B
135 139Right-handed 310
Helix 6
AA6
B
171 178Right-handed 310
Helix 7
AA7
C
99 105Right-handed alpha
Helix 8
AA8
C
145 152Right-handed alpha
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There are 10 sheets in PDB entry 6O06. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
72 80first strand
Strand 2
A
232 250anti-parallel
Strand 3
A
110 127anti-parallel
Strand 4
A
180 183anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
72 80first strand
Strand 2
A
232 250anti-parallel
Strand 3
A
110 127anti-parallel
Strand 4
A
192 193anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
91 94first strand
Strand 2
A
218 223anti-parallel
Strand 3
A
141 147anti-parallel
Strand 4
A
169 173anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
6 10first strand
Strand 2
B
15 19anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
25 26first strand
Strand 2
B
190 195parallel
Strand 3
B
95 105anti-parallel
Strand 4
B
232 245anti-parallel
Strand 5
B
57 58anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
25 26first strand
Strand 2
B
190 195parallel
Strand 3
B
95 105anti-parallel
Strand 4
B
232 245anti-parallel
Strand 5
B
62 64anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
71 75first strand
Strand 2
B
212 224anti-parallel
Strand 3
B
111 121anti-parallel
Strand 4
B
180 184anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
51 52first strand
Strand 2
C
209 223anti-parallel
Strand 3
C
71 73anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
51 52first strand
Strand 2
C
209 223anti-parallel
Strand 3
C
111 121anti-parallel
Strand 4
C
164 173anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
82 86first strand
Strand 2
C
190 195anti-parallel
Strand 3
C
129 136anti-parallel
Strand 4
C
153 159anti-parallel
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