Analysis of interatomic Contacts of Structural Units in PDB entry:
6O07


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6O07 entry

There are 3 chains in PDB entry 6O07 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 ILE 5ILE 175
A
 VAL 54LEU 854
B
 PRO 2LEU 225
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 62 helices in PDB entry 6O07. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
C
15 26Right-handed alpha
Helix 2
AA2
C
100 103Right-handed 310
Helix 3
AA3
C
106 121Right-handed alpha
Helix 4
AA4
C
136 141Right-handed alpha
Helix 5
AA5
C
142 145Right-handed 310
Helix 6
AA6
A
55 68Right-handed alpha
Helix 7
AA7
A
69 84Right-handed alpha
Helix 8
AA8
A
90 104Right-handed alpha
Helix 9
AA9
A
106 120Right-handed alpha
Helix 10
AB1
A
126 138Right-handed alpha
Helix 11
AB2
A
140 155Right-handed alpha
Helix 12
AB3
A
158 172Right-handed alpha
Helix 13
AB4
A
174 189Right-handed alpha
Helix 14
AB5
A
197 217Right-handed alpha
Helix 15
AB6
A
219 234Right-handed alpha
Helix 16
AB7
A
235 237Right-handed 310
Helix 17
AB8
A
239 254Right-handed alpha
Helix 18
AB9
A
256 271Right-handed alpha
Helix 19
AC1
A
274 286Right-handed alpha
Helix 20
AC2
A
287 289Right-handed 310
Helix 21
AC3
A
290 305Right-handed alpha
Helix 22
AC4
A
309 314Right-handed alpha
Helix 23
AC5
A
315 318Right-handed 310
Helix 24
AC6
A
321 340Right-handed alpha
Helix 25
AC7
A
343 355Right-handed alpha
Helix 26
AC8
A
355 373Right-handed alpha
Helix 27
AC9
A
379 397Right-handed alpha
Helix 28
AD1
A
399 414Right-handed alpha
Helix 29
AD2
A
417 432Right-handed alpha
Helix 30
AD3
A
433 448Right-handed alpha
Helix 31
AD4
A
451 465Right-handed alpha
Helix 32
AD5
A
467 476Right-handed alpha
Helix 33
AD6
A
487 494Right-handed alpha
Helix 34
AD7
A
496 523Right-handed alpha
Helix 35
AD8
A
535 559Right-handed alpha
Helix 36
AD9
A
559 571Right-handed alpha
Helix 37
AE1
A
574 583Right-handed alpha
Helix 38
AE2
A
584 596Right-handed alpha
Helix 39
AE3
A
597 600Right-handed 310
Helix 40
AE4
A
601 623Right-handed alpha
Helix 41
AE5
A
658 666Right-handed alpha
Helix 42
AE6
A
682 687Right-handed alpha
Helix 43
AE7
A
690 699Right-handed alpha
Helix 44
AE8
A
699 707Right-handed alpha
Helix 45
AE9
A
708 712Right-handed 310
Helix 46
AF1
A
713 723Right-handed alpha
Helix 47
AF2
A
726 741Right-handed alpha
Helix 48
AF3
A
745 759Right-handed alpha
Helix 49
AF4
A
766 782Right-handed alpha
Helix 50
AF5
A
786 791Right-handed 310
Helix 51
AF6
A
796 806Right-handed alpha
Helix 52
AF7
A
809 819Right-handed alpha
Helix 53
AF8
A
826 837Right-handed alpha
Helix 54
AF9
A
842 852Right-handed alpha
Helix 55
AG1
B
9 11Right-handed 310
Helix 56
AG2
B
12 22Right-handed alpha
Helix 57
AG3
B
29 38Right-handed alpha
Helix 58
AG4
B
122 125Right-handed 310
Helix 59
AG5
B
128 146Right-handed alpha
Helix 60
AG6
B
158 166Right-handed alpha
Helix 61
AG7
B
195 200Right-handed alpha
Helix 62
AG8
B
201 204Right-handed 310
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There are 4 sheets in PDB entry 6O07. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
7 9first strand
Strand 2
C
61 66anti-parallel
Strand 3
C
69 76anti-parallel
Strand 4
C
93 98anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
126 132first strand
Strand 2
C
168 174anti-parallel
Strand 3
C
148 149anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 7first strand
Strand 2
B
45 49anti-parallel
Strand 3
B
90 100anti-parallel
Strand 4
B
85 87anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 7first strand
Strand 2
B
45 49anti-parallel
Strand 3
B
90 100anti-parallel
Strand 4
B
112 120anti-parallel
Strand 5
B
149 152parallel
Strand 6
B
190 193anti-parallel
Strand 7
B
172 173anti-parallel
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