Analysis of interatomic Contacts of Structural Units in PDB entry:
6O09

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6O09 entry

There are 10 chains in PDB entry 6O09 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	ASN -5	GLU 257
I	PRO 78	GLN 91
A	ASN -5	GLU 257
B	PRO 78	ILE 90
D	LEU -4	GLU 258
E	PRO 78	ILE 90
F	LEU -4	GLU 258
G	LEU 79	ILE 90
H	LEU -4	GLU 256
J	PRO 78	PHE 88

There are 45 helices in PDB entry 6O09. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	8	20	Right-handed alpha
Helix 2	AA2	C	55	57	Right-handed 310
Helix 3	AA3	C	72	80	Right-handed alpha
Helix 4	AA4	C	141	153	Right-handed alpha
Helix 5	AA5	C	190	194	Right-handed 310
Helix 6	AA6	C	209	216	Right-handed alpha
Helix 7	AA7	C	217	222	Right-handed 310
Helix 8	AA8	I	83	87	Right-handed 310
Helix 9	AA9	A	8	20	Right-handed alpha
Helix 10	AB1	A	55	57	Right-handed 310
Helix 11	AB2	A	72	80	Right-handed alpha
Helix 12	AB3	A	141	153	Right-handed alpha
Helix 13	AB4	A	190	194	Right-handed 310
Helix 14	AB5	A	209	216	Right-handed alpha
Helix 15	AB6	A	217	222	Right-handed 310
Helix 16	AB7	B	83	87	Right-handed 310
Helix 17	AB8	D	8	20	Right-handed alpha
Helix 18	AB9	D	55	57	Right-handed 310
Helix 19	AC1	D	72	80	Right-handed alpha
Helix 20	AC2	D	141	153	Right-handed alpha
Helix 21	AC3	D	209	216	Right-handed alpha
Helix 22	AC4	D	217	222	Right-handed 310
Helix 23	AC5	E	83	87	Right-handed 310
Helix 24	AC6	F	8	20	Right-handed alpha
Helix 25	AC7	F	55	57	Right-handed 310
Helix 26	AC8	F	72	80	Right-handed alpha
Helix 27	AC9	F	141	153	Right-handed alpha
Helix 28	AD1	F	190	194	Right-handed 310
Helix 29	AD2	F	209	216	Right-handed alpha
Helix 30	AD3	F	217	222	Right-handed 310
Helix 31	AD4	G	83	87	Right-handed 310
Helix 32	AD5	H	8	20	Right-handed alpha
Helix 33	AD6	H	55	57	Right-handed 310
Helix 34	AD7	H	72	80	Right-handed alpha
Helix 35	AD8	H	141	153	Right-handed alpha
Helix 36	AD9	H	209	216	Right-handed alpha
Helix 37	AE1	H	217	222	Right-handed 310
Helix 38	AE2	J	83	87	Right-handed 310
Helix 39	AE3	K	8	20	Right-handed alpha
Helix 40	AE4	K	55	57	Right-handed 310
Helix 41	AE5	K	72	80	Right-handed alpha
Helix 42	AE6	K	141	153	Right-handed alpha
Helix 43	AE7	K	209	216	Right-handed alpha
Helix 44	AE8	K	217	222	Right-handed 310
Helix 45	AE9	L	83	87	Right-handed 310

There are 24 sheets in PDB entry 6O09. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	59	63	first strand
Strand 2	C	1	6	anti-parallel
Strand 3	C	87	93	anti-parallel
Strand 4	C	98	104	anti-parallel
Strand 5	C	111	117	anti-parallel

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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	67	71	first strand
Strand 2	C	25	30	anti-parallel
Strand 3	C	34	40	anti-parallel
Strand 4	C	46	53	anti-parallel
Strand 5	C	245	251	anti-parallel
Strand 6	C	235	240	anti-parallel
Strand 7	C	224	229	anti-parallel
Strand 8	C	135	140	anti-parallel
Strand 9	C	196	199	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	176	182	first strand
Strand 2	C	166	173	anti-parallel
Strand 3	C	157	163	anti-parallel
Strand 4	C	203	208	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	254	256	first strand
Strand 2	I	79	81	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	59	62	first strand
Strand 2	A	1	6	anti-parallel
Strand 3	A	87	93	anti-parallel
Strand 4	A	98	104	anti-parallel
Strand 5	A	111	117	anti-parallel

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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	67	71	first strand
Strand 2	A	25	30	anti-parallel
Strand 3	A	34	40	anti-parallel
Strand 4	A	46	53	anti-parallel
Strand 5	A	245	251	anti-parallel
Strand 6	A	235	240	anti-parallel
Strand 7	A	224	229	anti-parallel
Strand 8	A	135	140	anti-parallel
Strand 9	A	196	199	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	176	182	first strand
Strand 2	A	166	173	anti-parallel
Strand 3	A	157	163	anti-parallel
Strand 4	A	203	208	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	254	256	first strand
Strand 2	B	79	81	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	59	62	first strand
Strand 2	D	1	6	anti-parallel
Strand 3	D	87	93	anti-parallel
Strand 4	D	98	104	anti-parallel
Strand 5	D	111	117	anti-parallel

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There are 9 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	66	71	first strand
Strand 2	D	25	30	anti-parallel
Strand 3	D	34	40	anti-parallel
Strand 4	D	46	53	anti-parallel
Strand 5	D	245	251	anti-parallel
Strand 6	D	235	240	anti-parallel
Strand 7	D	224	229	anti-parallel
Strand 8	D	135	140	anti-parallel
Strand 9	D	196	199	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	177	182	first strand
Strand 2	D	166	172	anti-parallel
Strand 3	D	157	163	anti-parallel
Strand 4	D	203	208	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	254	255	first strand
Strand 2	E	80	81	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	59	62	first strand
Strand 2	F	1	6	anti-parallel
Strand 3	F	87	93	anti-parallel
Strand 4	F	98	104	anti-parallel
Strand 5	F	111	117	anti-parallel

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There are 9 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	67	71	first strand
Strand 2	F	25	30	anti-parallel
Strand 3	F	34	40	anti-parallel
Strand 4	F	46	53	anti-parallel
Strand 5	F	245	251	anti-parallel
Strand 6	F	235	240	anti-parallel
Strand 7	F	224	229	anti-parallel
Strand 8	F	135	140	anti-parallel
Strand 9	F	196	199	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	177	182	first strand
Strand 2	F	166	172	anti-parallel
Strand 3	F	157	163	anti-parallel
Strand 4	F	203	208	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	254	255	first strand
Strand 2	G	80	81	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	59	61	first strand
Strand 2	H	1	6	anti-parallel
Strand 3	H	87	93	anti-parallel
Strand 4	H	98	104	anti-parallel
Strand 5	H	111	117	anti-parallel

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There are 9 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	67	71	first strand
Strand 2	H	25	30	anti-parallel
Strand 3	H	34	40	anti-parallel
Strand 4	H	46	53	anti-parallel
Strand 5	H	245	251	anti-parallel
Strand 6	H	235	240	anti-parallel
Strand 7	H	224	229	anti-parallel
Strand 8	H	135	140	anti-parallel
Strand 9	H	196	199	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	177	182	first strand
Strand 2	H	167	172	anti-parallel
Strand 3	H	157	162	anti-parallel
Strand 4	H	203	208	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	254	255	first strand
Strand 2	J	80	81	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	59	62	first strand
Strand 2	K	1	6	anti-parallel
Strand 3	K	87	93	anti-parallel
Strand 4	K	98	104	anti-parallel
Strand 5	K	111	117	anti-parallel

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There are 9 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	67	71	first strand
Strand 2	K	25	30	anti-parallel
Strand 3	K	34	40	anti-parallel
Strand 4	K	46	53	anti-parallel
Strand 5	K	245	251	anti-parallel
Strand 6	K	235	241	anti-parallel
Strand 7	K	224	229	anti-parallel
Strand 8	K	135	140	anti-parallel
Strand 9	K	196	199	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	177	182	first strand
Strand 2	K	167	172	anti-parallel
Strand 3	K	157	162	anti-parallel
Strand 4	K	203	208	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	254	255	first strand
Strand 2	L	80	81	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6O09

Analysis of interatomic Contacts of Structural Units in PDB entry:
6O09