Analysis of interatomic Contacts of Structural Units in PDB entry:
6O0B


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6O0B entry

There are 2 chains in PDB entry 6O0B (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 2ALA 286
B
 MET 2GLU 288
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 29 helices in PDB entry 6O0B. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
14 29Right-handed alpha
Helix 2
AA2
A
45 50Right-handed alpha
Helix 3
AA3
A
56 64Right-handed alpha
Helix 4
AA4
A
66 70Right-handed 310
Helix 5
AA5
A
71 75Right-handed 310
Helix 6
AA6
A
80 82Right-handed 310
Helix 7
AA7
A
97 112Right-handed alpha
Helix 8
AA8
A
136 141Right-handed alpha
Helix 9
AA9
A
154 171Right-handed alpha
Helix 10
AB1
A
191 204Right-handed alpha
Helix 11
AB2
A
214 223Right-handed alpha
Helix 12
AB3
A
226 231Right-handed alpha
Helix 13
AB4
A
234 250Right-handed alpha
Helix 14
AB5
A
260 271Right-handed alpha
Helix 15
AB6
B
14 29Right-handed alpha
Helix 16
AB7
B
45 50Right-handed alpha
Helix 17
AB8
B
56 65Right-handed alpha
Helix 18
AB9
B
66 70Right-handed 310
Helix 19
AC1
B
71 76Right-handed alpha
Helix 20
AC2
B
80 82Right-handed 310
Helix 21
AC3
B
97 112Right-handed alpha
Helix 22
AC4
B
136 141Right-handed alpha
Helix 23
AC5
B
154 171Right-handed alpha
Helix 24
AC6
B
191 204Right-handed alpha
Helix 25
AC7
B
214 222Right-handed alpha
Helix 26
AC8
B
226 231Right-handed alpha
Helix 27
AC9
B
234 249Right-handed alpha
Helix 28
AD1
B
260 271Right-handed alpha
Helix 29
AD2
B
278 282Right-handed 310
Back to top of page

There are 2 sheets in PDB entry 6O0B. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
77 78first strand
Strand 2
A
84 87anti-parallel
Strand 3
A
33 38parallel
Strand 4
A
121 127parallel
Strand 5
A
3 9parallel
Strand 6
A
146 151parallel
Strand 7
A
178 185parallel
Strand 8
A
207 211parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
77 78first strand
Strand 2
B
84 87anti-parallel
Strand 3
B
33 38parallel
Strand 4
B
121 127parallel
Strand 5
B
3 9parallel
Strand 6
B
146 151parallel
Strand 7
B
178 185parallel
Strand 8
B
207 211parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il