Analysis of interatomic Contacts of Structural Units in PDB entry:
6O0E

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6O0E entry

There are 2 chains in PDB entry 6O0E (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 4	LEU 832
B	LYS 5	ILE 512

There are 60 helices in PDB entry 6O0E. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	13	27	Right-handed alpha
Helix 2	AA2	A	41	51	Right-handed alpha
Helix 3	AA3	A	60	62	Right-handed 310
Helix 4	AA4	A	63	68	Right-handed alpha
Helix 5	AA5	A	89	101	Right-handed alpha
Helix 6	AA6	A	159	167	Right-handed alpha
Helix 7	AA7	A	248	252	Right-handed 310
Helix 8	AA8	A	268	278	Right-handed alpha
Helix 9	AA9	A	290	299	Right-handed alpha
Helix 10	AB1	A	309	313	Right-handed 310
Helix 11	AB2	A	333	344	Right-handed alpha
Helix 12	AB3	A	355	357	Right-handed 310
Helix 13	AB4	A	358	363	Right-handed 310
Helix 14	AB5	A	376	380	Right-handed 310
Helix 15	AB6	A	401	415	Right-handed alpha
Helix 16	AB7	A	445	451	Right-handed alpha
Helix 17	AB8	A	451	462	Right-handed alpha
Helix 18	AB9	A	479	494	Right-handed alpha
Helix 19	AC1	A	504	514	Right-handed alpha
Helix 20	AC2	A	523	533	Right-handed alpha
Helix 21	AC3	A	548	553	Right-handed alpha
Helix 22	AC4	A	578	582	Right-handed 310
Helix 23	AC5	A	598	608	Right-handed alpha
Helix 24	AC6	A	658	669	Right-handed alpha
Helix 25	AC7	A	678	683	Right-handed alpha
Helix 26	AC8	A	684	688	Right-handed 310
Helix 27	AC9	A	736	751	Right-handed alpha
Helix 28	AD1	A	790	797	Right-handed alpha
Helix 29	AD2	A	797	806	Right-handed alpha
Helix 30	AD3	A	814	820	Right-handed alpha
Helix 31	AD4	B	13	27	Right-handed alpha
Helix 32	AD5	B	41	51	Right-handed alpha
Helix 33	AD6	B	60	62	Right-handed 310
Helix 34	AD7	B	63	68	Right-handed alpha
Helix 35	AD8	B	89	101	Right-handed alpha
Helix 36	AD9	B	159	165	Right-handed alpha
Helix 37	AE1	B	248	252	Right-handed 310
Helix 38	AE2	B	268	278	Right-handed alpha
Helix 39	AE3	B	290	299	Right-handed alpha
Helix 40	AE4	B	333	344	Right-handed alpha
Helix 41	AE5	B	355	357	Right-handed 310
Helix 42	AE6	B	376	380	Right-handed 310
Helix 43	AE7	B	401	415	Right-handed alpha
Helix 44	AE8	B	445	451	Right-handed alpha
Helix 45	AE9	B	451	462	Right-handed alpha
Helix 46	AF1	B	479	492	Right-handed alpha
Helix 47	AF2	B	504	514	Right-handed alpha
Helix 48	AF3	B	523	525	Right-handed 310
Helix 49	AF4	B	526	533	Right-handed alpha
Helix 50	AF5	B	548	553	Right-handed alpha
Helix 51	AF6	B	578	582	Right-handed 310
Helix 52	AF7	B	598	609	Right-handed alpha
Helix 53	AF8	B	630	634	Right-handed 310
Helix 54	AF9	B	658	670	Right-handed alpha
Helix 55	AG1	B	678	683	Right-handed alpha
Helix 56	AG2	B	685	689	Right-handed 310
Helix 57	AG3	B	736	752	Right-handed alpha
Helix 58	AG4	B	790	797	Right-handed alpha
Helix 59	AG5	B	797	806	Right-handed alpha
Helix 60	AG6	B	814	820	Right-handed alpha

There are 22 sheets in PDB entry 6O0E. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	5	11	first strand
Strand 2	A	32	38	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	57	59	first strand
Strand 2	A	392	396	anti-parallel
Strand 3	A	74	79	anti-parallel
Strand 4	A	438	439	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	120	122	first strand
Strand 2	A	129	131	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	192	194	first strand
Strand 2	A	201	203	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	228	232	first strand
Strand 2	A	822	826	parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	302	303	first strand
Strand 2	A	257	259	parallel
Strand 3	A	349	353	parallel
Strand 4	A	235	242	anti-parallel
Strand 5	A	365	369	anti-parallel
Strand 6	A	373	375	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	302	303	first strand
Strand 2	A	257	259	parallel
Strand 3	A	349	353	parallel
Strand 4	A	235	242	anti-parallel
Strand 5	A	387	388	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	473	477	first strand
Strand 2	A	497	501	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	519	522	first strand
Strand 2	A	729	732	anti-parallel
Strand 3	A	536	542	anti-parallel
Strand 4	A	780	783	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	676	677	first strand
Strand 2	A	565	567	anti-parallel
Strand 3	A	723	724	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	569	570	first strand
Strand 2	A	703	704	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	6	11	first strand
Strand 2	B	33	38	parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	57	59	first strand
Strand 2	B	392	396	anti-parallel
Strand 3	B	74	79	anti-parallel
Strand 4	B	438	439	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	120	122	first strand
Strand 2	B	129	131	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	192	194	first strand
Strand 2	B	201	203	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	228	231	first strand
Strand 2	B	822	825	parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	302	303	first strand
Strand 2	B	257	259	parallel
Strand 3	B	349	353	parallel
Strand 4	B	235	242	anti-parallel
Strand 5	B	365	369	anti-parallel
Strand 6	B	373	375	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	302	303	first strand
Strand 2	B	257	259	parallel
Strand 3	B	349	353	parallel
Strand 4	B	235	242	anti-parallel
Strand 5	B	387	388	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	473	477	first strand
Strand 2	B	497	501	parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	519	522	first strand
Strand 2	B	729	732	anti-parallel
Strand 3	B	536	542	anti-parallel
Strand 4	B	780	783	anti-parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	621	622	first strand
Strand 2	B	587	589	parallel
Strand 3	B	673	677	parallel
Strand 4	B	565	570	anti-parallel
Strand 5	B	703	705	anti-parallel
Strand 6	B	711	713	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	621	622	first strand
Strand 2	B	587	589	parallel
Strand 3	B	673	677	parallel
Strand 4	B	565	570	anti-parallel
Strand 5	B	723	724	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6O0E

Analysis of interatomic Contacts of Structural Units in PDB entry:
6O0E