Analysis of interatomic Contacts of Structural Units in PDB entry:
6O0X


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6O0X entry

There are 5 chains in PDB entry 6O0X (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 3GLY 1366
B
 G 1 U 98
C
 C 1 G 13
D
 T 5 G 40
c
 T 14 A 36
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 51 helices in PDB entry 6O0X. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
59 94Right-handed alpha
Helix 2
AA2
A
96 103Right-handed alpha
Helix 3
AA3
A
122 132Right-handed alpha
Helix 4
AA4
A
135 145Right-handed alpha
Helix 5
AA5
A
150 164Right-handed alpha
Helix 6
AA6
A
180 196Right-handed alpha
Helix 7
AA7
A
217 228Right-handed alpha
Helix 8
AA8
A
236 247Right-handed alpha
Helix 9
AA9
A
271 281Right-handed alpha
Helix 10
AB1
A
286 302Right-handed alpha
Helix 11
AB2
A
315 343Right-handed alpha
Helix 12
AB3
A
346 352Right-handed alpha
Helix 13
AB4
A
358 364Right-handed alpha
Helix 14
AB5
A
368 382Right-handed alpha
Helix 15
AB6
A
387 395Right-handed alpha
Helix 16
AB7
A
406 410Right-handed 310
Helix 17
AB8
A
411 426Right-handed alpha
Helix 18
AB9
A
430 436Right-handed alpha
Helix 19
AC1
A
436 446Right-handed alpha
Helix 20
AC2
A
477 481Right-handed 310
Helix 21
AC3
A
483 494Right-handed alpha
Helix 22
AC4
A
512 525Right-handed alpha
Helix 23
AC5
A
541 552Right-handed alpha
Helix 24
AC6
A
560 569Right-handed alpha
Helix 25
AC7
A
591 601Right-handed alpha
Helix 26
AC8
A
603 609Right-handed alpha
Helix 27
AC9
A
610 612Right-handed 310
Helix 28
AD1
A
613 626Right-handed alpha
Helix 29
AD2
A
628 637Right-handed alpha
Helix 30
AD3
A
638 640Right-handed 310
Helix 31
AD4
A
644 652Right-handed alpha
Helix 32
AD5
A
664 669Right-handed alpha
Helix 33
AD6
A
678 685Right-handed alpha
Helix 34
AD7
A
703 710Right-handed alpha
Helix 35
AD8
A
719 726Right-handed alpha
Helix 36
AD9
A
730 750Right-handed alpha
Helix 37
AE1
A
927 940Right-handed alpha
Helix 38
AE2
A
959 970Right-handed alpha
Helix 39
AE3
A
981 1000Right-handed alpha
Helix 40
AE4
A
1079 1087Right-handed alpha
Helix 41
AE5
A
1127 1132Right-handed alpha
Helix 42
AE6
A
1170 1177Right-handed alpha
Helix 43
AE7
A
1177 1186Right-handed alpha
Helix 44
AE8
A
1207 1209Right-handed 310
Helix 45
AE9
A
1229 1241Right-handed alpha
Helix 46
AF1
A
1248 1262Right-handed alpha
Helix 47
AF2
A
1264 1281Right-handed alpha
Helix 48
AF3
A
1283 1297Right-handed alpha
Helix 49
AF4
A
1301 1312Right-handed alpha
Helix 50
AF5
A
1313 1316Right-handed 310
Helix 51
AF6
A
1340 1344Right-handed 310
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There are 6 sheets in PDB entry 6O0X. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
48 52first strand
Strand 2
A
15 21anti-parallel
Strand 3
A
6 11anti-parallel
Strand 4
A
758 761parallel
Strand 5
A
954 957parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
29 33first strand
Strand 2
A
42 46anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
35 36first strand
Strand 2
A
1357 1361parallel
Strand 3
A
1346 1350anti-parallel
Strand 4
A
1204 1205anti-parallel
Strand 5
A
1211 1214anti-parallel
Strand 6
A
1220 1222anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
528 530first strand
Strand 2
A
579 581anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1157 1167first strand
Strand 2
A
1139 1150anti-parallel
Strand 3
A
1196 1198anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1324 1325first strand
Strand 2
A
1330 1331anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il