Analysis of interatomic Contacts of Structural Units in PDB entry:
6O0Y


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6O0Y entry

There are 5 chains in PDB entry 6O0Y (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 3GLY 1366
B
 G 1 U 98
C
 C 1 G 13
D
 T 5 G 40
c
 T 14 A 36
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 55 helices in PDB entry 6O0Y. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
59 92Right-handed alpha
Helix 2
AA2
A
96 103Right-handed alpha
Helix 3
AA3
A
121 132Right-handed alpha
Helix 4
AA4
A
135 145Right-handed alpha
Helix 5
AA5
A
150 164Right-handed alpha
Helix 6
AA6
A
315 343Right-handed alpha
Helix 7
AA7
A
346 352Right-handed alpha
Helix 8
AA8
A
358 364Right-handed alpha
Helix 9
AA9
A
368 383Right-handed alpha
Helix 10
AB1
A
386 394Right-handed alpha
Helix 11
AB2
A
404 410Right-handed 310
Helix 12
AB3
A
411 427Right-handed alpha
Helix 13
AB4
A
430 436Right-handed alpha
Helix 14
AB5
A
436 446Right-handed alpha
Helix 15
AB6
A
483 494Right-handed alpha
Helix 16
AB7
A
512 525Right-handed alpha
Helix 17
AB8
A
541 552Right-handed alpha
Helix 18
AB9
A
560 567Right-handed alpha
Helix 19
AC1
A
591 602Right-handed alpha
Helix 20
AC2
A
604 609Right-handed alpha
Helix 21
AC3
A
612 626Right-handed alpha
Helix 22
AC4
A
631 637Right-handed alpha
Helix 23
AC5
A
638 640Right-handed 310
Helix 24
AC6
A
644 652Right-handed alpha
Helix 25
AC7
A
663 668Right-handed alpha
Helix 26
AC8
A
678 685Right-handed alpha
Helix 27
AC9
A
692 698Right-handed alpha
Helix 28
AD1
A
704 712Right-handed alpha
Helix 29
AD2
A
719 726Right-handed alpha
Helix 30
AD3
A
730 751Right-handed alpha
Helix 31
AD4
A
769 776Right-handed alpha
Helix 32
AD5
A
779 791Right-handed alpha
Helix 33
AD6
A
794 798Right-handed 310
Helix 34
AD7
A
808 817Right-handed alpha
Helix 35
AD8
A
859 866Right-handed alpha
Helix 36
AD9
A
872 889Right-handed alpha
Helix 37
AE1
A
893 901Right-handed alpha
Helix 38
AE2
A
902 905Right-handed 310
Helix 39
AE3
A
917 940Right-handed alpha
Helix 40
AE4
A
960 970Right-handed alpha
Helix 41
AE5
A
981 1000Right-handed alpha
Helix 42
AE6
A
1080 1087Right-handed alpha
Helix 43
AE7
A
1127 1132Right-handed alpha
Helix 44
AE8
A
1170 1177Right-handed alpha
Helix 45
AE9
A
1177 1185Right-handed alpha
Helix 46
AF1
A
1191 1195Right-handed 310
Helix 47
AF2
A
1207 1209Right-handed 310
Helix 48
AF3
A
1229 1240Right-handed alpha
Helix 49
AF4
A
1252 1261Right-handed alpha
Helix 50
AF5
A
1263 1278Right-handed alpha
Helix 51
AF6
A
1283 1296Right-handed alpha
Helix 52
AF7
A
1301 1313Right-handed alpha
Helix 53
AF8
A
1314 1317Right-handed 310
Helix 54
AF9
A
1341 1344Right-handed 310
Helix 55
AG1
A
1363 1365Right-handed 310
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There are 7 sheets in PDB entry 6O0Y. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
954 959first strand
Strand 2
A
758 763parallel
Strand 3
A
6 11parallel
Strand 4
A
15 21anti-parallel
Strand 5
A
48 52anti-parallel
Strand 6
A
1093 1096parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
29 33first strand
Strand 2
A
42 46anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
35 36first strand
Strand 2
A
1357 1361parallel
Strand 3
A
1346 1350anti-parallel
Strand 4
A
1203 1205anti-parallel
Strand 5
A
1211 1214anti-parallel
Strand 6
A
1220 1222anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
528 530first strand
Strand 2
A
579 581anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
837 840first strand
Strand 2
A
855 858anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1157 1167first strand
Strand 2
A
1139 1150anti-parallel
Strand 3
A
1196 1198anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1324 1325first strand
Strand 2
A
1330 1331anti-parallel
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