Analysis of interatomic Contacts of Structural Units in PDB entry:
6O0Z


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6O0Z entry

There are 4 chains in PDB entry 6O0Z (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 3GLY 1366
B
 C 3 U 98
C
 C 1 G 28
D
 C 30 G 40
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 63 helices in PDB entry 6O0Z. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
59 86Right-handed alpha
Helix 2
AA2
A
86 91Right-handed alpha
Helix 3
AA3
A
96 103Right-handed alpha
Helix 4
AA4
A
122 132Right-handed alpha
Helix 5
AA5
A
134 145Right-handed alpha
Helix 6
AA6
A
150 164Right-handed alpha
Helix 7
AA7
A
181 196Right-handed alpha
Helix 8
AA8
A
207 212Right-handed alpha
Helix 9
AA9
A
218 227Right-handed alpha
Helix 10
AB1
A
233 238Right-handed alpha
Helix 11
AB2
A
238 245Right-handed alpha
Helix 12
AB3
A
269 281Right-handed alpha
Helix 13
AB4
A
289 302Right-handed alpha
Helix 14
AB5
A
315 342Right-handed alpha
Helix 15
AB6
A
343 345Right-handed 310
Helix 16
AB7
A
346 352Right-handed alpha
Helix 17
AB8
A
358 364Right-handed alpha
Helix 18
AB9
A
368 383Right-handed alpha
Helix 19
AC1
A
386 395Right-handed alpha
Helix 20
AC2
A
411 426Right-handed alpha
Helix 21
AC3
A
430 436Right-handed alpha
Helix 22
AC4
A
436 446Right-handed alpha
Helix 23
AC5
A
477 482Right-handed alpha
Helix 24
AC6
A
483 494Right-handed alpha
Helix 25
AC7
A
512 525Right-handed alpha
Helix 26
AC8
A
543 556Right-handed alpha
Helix 27
AC9
A
562 573Right-handed alpha
Helix 28
AD1
A
591 602Right-handed alpha
Helix 29
AD2
A
605 609Right-handed 310
Helix 30
AD3
A
610 626Right-handed alpha
Helix 31
AD4
A
630 638Right-handed alpha
Helix 32
AD5
A
644 653Right-handed alpha
Helix 33
AD6
A
664 669Right-handed alpha
Helix 34
AD7
A
678 685Right-handed alpha
Helix 35
AD8
A
692 698Right-handed alpha
Helix 36
AD9
A
703 711Right-handed alpha
Helix 37
AE1
A
719 726Right-handed alpha
Helix 38
AE2
A
730 751Right-handed alpha
Helix 39
AE3
A
781 792Right-handed alpha
Helix 40
AE4
A
808 817Right-handed alpha
Helix 41
AE5
A
851 853Right-handed 310
Helix 42
AE6
A
872 879Right-handed alpha
Helix 43
AE7
A
881 889Right-handed alpha
Helix 44
AE8
A
893 902Right-handed alpha
Helix 45
AE9
A
903 905Right-handed 310
Helix 46
AF1
A
909 922Right-handed alpha
Helix 47
AF2
A
925 940Right-handed alpha
Helix 48
AF3
A
959 971Right-handed alpha
Helix 49
AF4
A
981 1001Right-handed alpha
Helix 50
AF5
A
1004 1009Right-handed alpha
Helix 51
AF6
A
1075 1088Right-handed alpha
Helix 52
AF7
A
1127 1132Right-handed alpha
Helix 53
AF8
A
1168 1177Right-handed alpha
Helix 54
AF9
A
1177 1186Right-handed alpha
Helix 55
AG1
A
1191 1195Right-handed 310
Helix 56
AG2
A
1207 1209Right-handed 310
Helix 57
AG3
A
1229 1241Right-handed alpha
Helix 58
AG4
A
1248 1261Right-handed alpha
Helix 59
AG5
A
1264 1280Right-handed alpha
Helix 60
AG6
A
1283 1297Right-handed alpha
Helix 61
AG7
A
1302 1312Right-handed alpha
Helix 62
AG8
A
1313 1315Right-handed 310
Helix 63
AG9
A
1341 1344Right-handed 310
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There are 7 sheets in PDB entry 6O0Z. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
954 957first strand
Strand 2
A
758 763parallel
Strand 3
A
6 11parallel
Strand 4
A
15 21anti-parallel
Strand 5
A
48 52anti-parallel
Strand 6
A
1093 1096parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
29 32first strand
Strand 2
A
43 46anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
35 36first strand
Strand 2
A
1357 1361parallel
Strand 3
A
1346 1350anti-parallel
Strand 4
A
1203 1205anti-parallel
Strand 5
A
1211 1214anti-parallel
Strand 6
A
1220 1222anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
839 840first strand
Strand 2
A
855 856anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1049 1051first strand
Strand 2
A
1057 1059anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1120 1121first strand
Strand 2
A
1133 1134anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1156 1167first strand
Strand 2
A
1139 1151anti-parallel
Strand 3
A
1196 1198anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il