Analysis of interatomic Contacts of Structural Units in PDB entry:
6O1M

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6O1M entry

There are 18 chains in PDB entry 6O1M (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY -2	ILE 259
B	GLY -2	ILE 259
C	HIS 5	ARG 69
D	HIS 5	PRO 71
E	HIS 5	PRO 71
F	SER 6	LEU 70
G	HIS 5	LEU 70
H	HIS 5	PRO 71
I	HIS 5	PRO 71
J	SER 6	LEU 70
K	HIS 5	ARG 69
L	SER 6	PRO 71
M	HIS 5	PRO 71
N	HIS 5	LEU 70
O	A 1	G 18
P	A 1	G 18
R	GLY -2	ILE 259
S	GLY -2	ILE 259

There are 52 helices in PDB entry 6O1M. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	10	16	Right-handed alpha
Helix 2	AA2	A	18	24	Right-handed alpha
Helix 3	AA3	A	85	90	Right-handed alpha
Helix 4	AA4	A	116	137	Right-handed alpha
Helix 5	AA5	A	154	158	Right-handed 310
Helix 6	AA6	A	160	164	Right-handed 310
Helix 7	AA7	A	171	184	Right-handed alpha
Helix 8	AA8	A	190	195	Right-handed alpha
Helix 9	AA9	A	207	213	Right-handed alpha
Helix 10	AB1	A	226	229	Right-handed 310
Helix 11	AB2	B	10	17	Right-handed alpha
Helix 12	AB3	B	19	24	Right-handed alpha
Helix 13	AB4	B	39	44	Right-handed alpha
Helix 14	AB5	B	85	90	Right-handed alpha
Helix 15	AB6	B	115	136	Right-handed alpha
Helix 16	AB7	B	137	139	Right-handed 310
Helix 17	AB8	B	160	164	Right-handed 310
Helix 18	AB9	B	171	182	Right-handed alpha
Helix 19	AC1	B	207	213	Right-handed alpha
Helix 20	AC2	B	226	229	Right-handed 310
Helix 21	AC3	C	7	18	Right-handed alpha
Helix 22	AC4	D	7	18	Right-handed alpha
Helix 23	AC5	E	7	18	Right-handed alpha
Helix 24	AC6	F	7	18	Right-handed alpha
Helix 25	AC7	G	7	18	Right-handed alpha
Helix 26	AC8	H	10	18	Right-handed alpha
Helix 27	AC9	I	7	18	Right-handed alpha
Helix 28	AD1	J	7	18	Right-handed alpha
Helix 29	AD2	K	7	19	Right-handed alpha
Helix 30	AD3	L	7	18	Right-handed alpha
Helix 31	AD4	M	7	18	Right-handed alpha
Helix 32	AD5	N	7	18	Right-handed alpha
Helix 33	AD6	R	10	16	Right-handed alpha
Helix 34	AD7	R	18	24	Right-handed alpha
Helix 35	AD8	R	25	27	Right-handed 310
Helix 36	AD9	R	85	90	Right-handed alpha
Helix 37	AE1	R	115	137	Right-handed alpha
Helix 38	AE2	R	160	164	Right-handed 310
Helix 39	AE3	R	171	182	Right-handed alpha
Helix 40	AE4	R	190	195	Right-handed alpha
Helix 41	AE5	R	207	213	Right-handed alpha
Helix 42	AE6	R	228	230	Right-handed 310
Helix 43	AE7	S	10	16	Right-handed alpha
Helix 44	AE8	S	18	25	Right-handed alpha
Helix 45	AE9	S	41	45	Right-handed 310
Helix 46	AF1	S	62	66	Right-handed 310
Helix 47	AF2	S	85	90	Right-handed alpha
Helix 48	AF3	S	115	137	Right-handed alpha
Helix 49	AF4	S	154	158	Right-handed 310
Helix 50	AF5	S	160	164	Right-handed 310
Helix 51	AF6	S	171	182	Right-handed alpha
Helix 52	AF7	S	207	213	Right-handed alpha

There are 11 sheets in PDB entry 6O1M. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	54	58	first strand
Strand 2	A	68	72	anti-parallel
Strand 3	A	30	34	anti-parallel
Strand 4	A	1	4	parallel
Strand 5	A	250	253	anti-parallel
Strand 6	A	232	236	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	78	81	first strand
Strand 2	A	94	98	anti-parallel
Strand 3	A	102	108	anti-parallel
Strand 4	A	142	148	parallel
Strand 5	A	220	224	anti-parallel
Strand 6	A	188	189	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	54	58	first strand
Strand 2	B	68	72	anti-parallel
Strand 3	B	30	34	anti-parallel
Strand 4	B	1	4	parallel
Strand 5	B	250	253	anti-parallel
Strand 6	B	232	236	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	78	81	first strand
Strand 2	B	94	98	anti-parallel
Strand 3	B	102	108	anti-parallel
Strand 4	B	142	148	parallel
Strand 5	B	220	224	anti-parallel
Strand 6	B	188	189	anti-parallel

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There are 27 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	54	55	first strand
Strand 2	D	43	47	anti-parallel
Strand 3	D	31	39	anti-parallel
Strand 4	D	21	26	anti-parallel
Strand 5	D	59	64	anti-parallel
Strand 6	C	52	54	anti-parallel
Strand 7	C	43	47	anti-parallel
Strand 8	C	31	40	anti-parallel
Strand 9	C	22	26	anti-parallel
Strand 10	C	59	63	anti-parallel
Strand 11	G	52	55	anti-parallel
Strand 12	G	43	47	anti-parallel
Strand 13	G	31	39	anti-parallel
Strand 14	G	22	26	anti-parallel
Strand 15	G	59	64	anti-parallel
Strand 16	H	51	55	anti-parallel
Strand 17	H	43	47	anti-parallel
Strand 18	H	31	39	anti-parallel
Strand 19	H	21	26	anti-parallel
Strand 20	H	59	64	anti-parallel
Strand 21	F	52	55	anti-parallel
Strand 22	F	43	47	anti-parallel
Strand 23	F	31	39	anti-parallel
Strand 24	F	22	26	anti-parallel
Strand 25	F	59	63	anti-parallel
Strand 26	E	51	55	anti-parallel
Strand 27	E	43	47	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	31	34	first strand
Strand 2	E	22	26	anti-parallel
Strand 3	E	59	64	anti-parallel

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There are 31 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	22	26	first strand
Strand 2	I	31	39	anti-parallel
Strand 3	I	43	47	anti-parallel
Strand 4	I	51	55	anti-parallel
Strand 5	J	59	64	anti-parallel
Strand 6	J	22	26	anti-parallel
Strand 7	J	31	39	anti-parallel
Strand 8	J	43	47	anti-parallel
Strand 9	J	51	55	anti-parallel
Strand 10	K	59	64	anti-parallel
Strand 11	K	22	26	anti-parallel
Strand 12	K	31	39	anti-parallel
Strand 13	K	43	47	anti-parallel
Strand 14	K	51	55	anti-parallel
Strand 15	L	59	64	anti-parallel
Strand 16	L	21	26	anti-parallel
Strand 17	L	31	39	anti-parallel
Strand 18	L	43	47	anti-parallel
Strand 19	L	51	55	anti-parallel
Strand 20	M	59	63	anti-parallel
Strand 21	M	22	26	anti-parallel
Strand 22	M	31	39	anti-parallel
Strand 23	M	43	47	anti-parallel
Strand 24	M	52	55	anti-parallel
Strand 25	N	59	63	anti-parallel
Strand 26	N	21	26	anti-parallel
Strand 27	N	31	39	anti-parallel
Strand 28	N	43	47	anti-parallel
Strand 29	N	52	55	anti-parallel
Strand 30	I	59	63	anti-parallel
Strand 31	I	22	26	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	54	58	first strand
Strand 2	R	68	72	anti-parallel
Strand 3	R	30	34	anti-parallel
Strand 4	R	1	7	parallel
Strand 5	R	249	253	anti-parallel
Strand 6	R	232	236	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	78	81	first strand
Strand 2	R	94	98	anti-parallel
Strand 3	R	102	108	anti-parallel
Strand 4	R	142	148	parallel
Strand 5	R	220	224	anti-parallel
Strand 6	R	188	189	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	54	58	first strand
Strand 2	S	68	72	anti-parallel
Strand 3	S	30	34	anti-parallel
Strand 4	S	1	7	parallel
Strand 5	S	249	253	anti-parallel
Strand 6	S	232	236	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	78	81	first strand
Strand 2	S	94	98	anti-parallel
Strand 3	S	102	108	anti-parallel
Strand 4	S	142	148	parallel
Strand 5	S	220	224	anti-parallel
Strand 6	S	188	189	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6O1M

Analysis of interatomic Contacts of Structural Units in PDB entry:
6O1M