Analysis of interatomic Contacts of Structural Units in PDB entry:
6O1U

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6O1U entry

There are 4 chains in PDB entry 6O1U (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 25	ASP 638
B	GLY 25	ASP 638
C	GLY 25	ASP 638
D	GLY 25	ASP 638

There are132 helices in PDB entry 6O1U. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	28	47	Right-handed alpha
Helix 2	AA2	A	47	56	Right-handed alpha
Helix 3	AA3	A	57	67	Right-handed alpha
Helix 4	AA4	A	81	89	Right-handed alpha
Helix 5	AA5	A	91	102	Right-handed alpha
Helix 6	AA6	A	103	106	Right-handed 310
Helix 7	AA7	A	112	116	Right-handed 310
Helix 8	AA8	A	119	127	Right-handed alpha
Helix 9	AA9	A	129	139	Right-handed alpha
Helix 10	AB1	A	165	173	Right-handed alpha
Helix 11	AB2	A	175	183	Right-handed alpha
Helix 12	AB3	A	198	205	Right-handed alpha
Helix 13	AB4	A	208	222	Right-handed alpha
Helix 14	AB5	A	242	250	Right-handed alpha
Helix 15	AB6	A	252	260	Right-handed alpha
Helix 16	AB7	A	280	285	Right-handed alpha
Helix 17	AB8	A	291	298	Right-handed alpha
Helix 18	AB9	A	302	310	Right-handed 310
Helix 19	AC1	A	312	324	Right-handed alpha
Helix 20	AC2	A	324	349	Right-handed alpha
Helix 21	AC3	A	379	411	Right-handed alpha
Helix 22	AC4	A	413	418	Right-handed alpha
Helix 23	AC5	A	425	446	Right-handed alpha
Helix 24	AC6	A	450	464	Right-handed alpha
Helix 25	AC7	A	465	472	Right-handed 310
Helix 26	AC8	A	475	487	Right-handed alpha
Helix 27	AC9	A	493	499	Right-handed alpha
Helix 28	AD1	A	499	512	Right-handed alpha
Helix 29	AD2	A	520	524	Right-handed 310
Helix 30	AD3	A	525	539	Right-handed alpha
Helix 31	AD4	A	552	566	Right-handed alpha
Helix 32	AD5	A	568	584	Right-handed alpha
Helix 33	AD6	A	597	608	Right-handed alpha
Helix 34	AD7	B	28	47	Right-handed alpha
Helix 35	AD8	B	47	56	Right-handed alpha
Helix 36	AD9	B	57	67	Right-handed alpha
Helix 37	AE1	B	81	89	Right-handed alpha
Helix 38	AE2	B	91	102	Right-handed alpha
Helix 39	AE3	B	103	106	Right-handed 310
Helix 40	AE4	B	112	116	Right-handed 310
Helix 41	AE5	B	119	127	Right-handed alpha
Helix 42	AE6	B	129	139	Right-handed alpha
Helix 43	AE7	B	165	173	Right-handed alpha
Helix 44	AE8	B	175	183	Right-handed alpha
Helix 45	AE9	B	198	205	Right-handed alpha
Helix 46	AF1	B	208	222	Right-handed alpha
Helix 47	AF2	B	242	250	Right-handed alpha
Helix 48	AF3	B	252	260	Right-handed alpha
Helix 49	AF4	B	280	285	Right-handed alpha
Helix 50	AF5	B	291	298	Right-handed alpha
Helix 51	AF6	B	302	310	Right-handed 310
Helix 52	AF7	B	312	324	Right-handed alpha
Helix 53	AF8	B	324	349	Right-handed alpha
Helix 54	AF9	B	379	411	Right-handed alpha
Helix 55	AG1	B	413	418	Right-handed alpha
Helix 56	AG2	B	425	446	Right-handed alpha
Helix 57	AG3	B	450	464	Right-handed alpha
Helix 58	AG4	B	465	472	Right-handed 310
Helix 59	AG5	B	475	487	Right-handed alpha
Helix 60	AG6	B	493	499	Right-handed alpha
Helix 61	AG7	B	499	512	Right-handed alpha
Helix 62	AG8	B	520	524	Right-handed 310
Helix 63	AG9	B	525	539	Right-handed alpha
Helix 64	AH1	B	552	566	Right-handed alpha
Helix 65	AH2	B	568	584	Right-handed alpha
Helix 66	AH3	B	597	608	Right-handed alpha
Helix 67	AH4	C	28	47	Right-handed alpha
Helix 68	AH5	C	47	56	Right-handed alpha
Helix 69	AH6	C	57	67	Right-handed alpha
Helix 70	AH7	C	81	89	Right-handed alpha
Helix 71	AH8	C	91	102	Right-handed alpha
Helix 72	AH9	C	103	106	Right-handed 310
Helix 73	AI1	C	112	116	Right-handed 310
Helix 74	AI2	C	119	127	Right-handed alpha
Helix 75	AI3	C	129	139	Right-handed alpha
Helix 76	AI4	C	165	173	Right-handed alpha
Helix 77	AI5	C	175	183	Right-handed alpha
Helix 78	AI6	C	198	205	Right-handed alpha
Helix 79	AI7	C	208	222	Right-handed alpha
Helix 80	AI8	C	242	250	Right-handed alpha
Helix 81	AI9	C	252	260	Right-handed alpha
Helix 82	AJ1	C	280	285	Right-handed alpha
Helix 83	AJ2	C	291	298	Right-handed alpha
Helix 84	AJ3	C	302	310	Right-handed 310
Helix 85	AJ4	C	312	324	Right-handed alpha
Helix 86	AJ5	C	324	349	Right-handed alpha
Helix 87	AJ6	C	379	411	Right-handed alpha
Helix 88	AJ7	C	413	418	Right-handed alpha
Helix 89	AJ8	C	425	446	Right-handed alpha
Helix 90	AJ9	C	450	464	Right-handed alpha
Helix 91	AK1	C	465	472	Right-handed 310
Helix 92	AK2	C	475	487	Right-handed alpha
Helix 93	AK3	C	493	499	Right-handed alpha
Helix 94	AK4	C	499	512	Right-handed alpha
Helix 95	AK5	C	520	524	Right-handed 310
Helix 96	AK6	C	525	539	Right-handed alpha
Helix 97	AK7	C	552	566	Right-handed alpha
Helix 98	AK8	C	568	584	Right-handed alpha
Helix 99	AK9	C	597	608	Right-handed alpha
Helix 100	AL1	D	28	47	Right-handed alpha
Helix 101	AL2	D	47	56	Right-handed alpha
Helix 102	AL3	D	57	67	Right-handed alpha
Helix 103	AL4	D	81	89	Right-handed alpha
Helix 104	AL5	D	91	102	Right-handed alpha
Helix 105	AL6	D	103	106	Right-handed 310
Helix 106	AL7	D	112	116	Right-handed 310
Helix 107	AL8	D	119	127	Right-handed alpha
Helix 108	AL9	D	129	139	Right-handed alpha
Helix 109	AM1	D	165	173	Right-handed alpha
Helix 110	AM2	D	175	183	Right-handed alpha
Helix 111	AM3	D	198	205	Right-handed alpha
Helix 112	AM4	D	208	222	Right-handed alpha
Helix 113	AM5	D	242	250	Right-handed alpha
Helix 114	AM6	D	252	260	Right-handed alpha
Helix 115	AM7	D	280	285	Right-handed alpha
Helix 116	AM8	D	291	298	Right-handed alpha
Helix 117	AM9	D	302	310	Right-handed 310
Helix 118	AN1	D	312	324	Right-handed alpha
Helix 119	AN2	D	324	349	Right-handed alpha
Helix 120	AN3	D	379	411	Right-handed alpha
Helix 121	AN4	D	413	418	Right-handed alpha
Helix 122	AN5	D	425	446	Right-handed alpha
Helix 123	AN6	D	450	464	Right-handed alpha
Helix 124	AN7	D	465	472	Right-handed 310
Helix 125	AN8	D	475	487	Right-handed alpha
Helix 126	AN9	D	493	499	Right-handed alpha
Helix 127	AO1	D	499	512	Right-handed alpha
Helix 128	AO2	D	520	524	Right-handed 310
Helix 129	AO3	D	525	539	Right-handed alpha
Helix 130	AO4	D	552	566	Right-handed alpha
Helix 131	AO5	D	568	584	Right-handed alpha
Helix 132	AO6	D	597	608	Right-handed alpha

There are 8 sheets in PDB entry 6O1U. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	264	270	first strand
Strand 2	A	273	278	anti-parallel
Strand 3	A	629	636	anti-parallel
Strand 4	A	618	619	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	352	354	first strand
Strand 2	A	370	372	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	264	270	first strand
Strand 2	B	273	278	anti-parallel
Strand 3	B	629	636	anti-parallel
Strand 4	B	618	619	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	352	354	first strand
Strand 2	B	370	372	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	264	270	first strand
Strand 2	C	273	278	anti-parallel
Strand 3	C	629	636	anti-parallel
Strand 4	C	618	619	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	352	354	first strand
Strand 2	C	370	372	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	264	270	first strand
Strand 2	D	273	278	anti-parallel
Strand 3	D	629	636	anti-parallel
Strand 4	D	618	619	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	352	354	first strand
Strand 2	D	370	372	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6O1U

Analysis of interatomic Contacts of Structural Units in PDB entry:
6O1U