Analysis of interatomic Contacts of Structural Units in PDB entry:
6O2D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6O2D entry

There are 2 chains in PDB entry 6O2D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR 498ASN 641
B
 TYR 494ARG 643
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 5 helices in PDB entry 6O2D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
527 529Right-handed 310
Helix 2
AA2
A
627 634Right-handed alpha
Helix 3
AA3
B
494 498Right-handed 310
Helix 4
AA4
B
527 529Right-handed 310
Helix 5
AA5
B
627 635Right-handed alpha
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There are 4 sheets in PDB entry 6O2D. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
501 507first strand
Strand 2
A
517 525anti-parallel
Strand 3
B
598 602anti-parallel
Strand 4
B
573 580anti-parallel
Strand 5
B
618 625anti-parallel
Strand 6
B
551 558anti-parallel
Strand 7
B
540 547anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
540 547first strand
Strand 2
A
551 558anti-parallel
Strand 3
A
618 626anti-parallel
Strand 4
A
572 580anti-parallel
Strand 5
A
598 602anti-parallel
Strand 6
B
517 525anti-parallel
Strand 7
B
501 507anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
563 568first strand
Strand 2
A
607 612anti-parallel
Strand 3
A
582 587anti-parallel
Strand 4
A
590 595anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
563 568first strand
Strand 2
B
607 612anti-parallel
Strand 3
B
583 587anti-parallel
Strand 4
B
590 594anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il