Analysis of interatomic Contacts of Structural Units in PDB entry:
6O4N


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6O4N entry

There are 2 chains in PDB entry 6O4N (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 3ALA 424
B
 ASP 3ALA 424
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 6O4N. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
60 64Right-handed 310
Helix 2
AA2
A
66 76Right-handed alpha
Helix 3
AA3
A
76 82Right-handed alpha
Helix 4
AA4
A
88 101Right-handed alpha
Helix 5
AA5
A
109 129Right-handed alpha
Helix 6
AA6
A
131 138Right-handed alpha
Helix 7
AA7
A
155 158Right-handed 310
Helix 8
AA8
A
176 198Right-handed alpha
Helix 9
AA9
A
216 231Right-handed alpha
Helix 10
AB1
A
246 249Right-handed 310
Helix 11
AB2
A
262 277Right-handed alpha
Helix 12
AB3
A
290 302Right-handed alpha
Helix 13
AB4
A
316 326Right-handed alpha
Helix 14
AB5
A
335 339Right-handed 310
Helix 15
AB6
A
341 354Right-handed alpha
Helix 16
AB7
A
371 380Right-handed alpha
Helix 17
AB8
A
392 410Right-handed alpha
Helix 18
AB9
A
411 413Right-handed 310
Helix 19
AC1
B
60 64Right-handed 310
Helix 20
AC2
B
66 76Right-handed alpha
Helix 21
AC3
B
76 82Right-handed alpha
Helix 22
AC4
B
88 101Right-handed alpha
Helix 23
AC5
B
109 129Right-handed alpha
Helix 24
AC6
B
131 138Right-handed alpha
Helix 25
AC7
B
155 158Right-handed 310
Helix 26
AC8
B
176 198Right-handed alpha
Helix 27
AC9
B
216 231Right-handed alpha
Helix 28
AD1
B
246 249Right-handed 310
Helix 29
AD2
B
262 277Right-handed alpha
Helix 30
AD3
B
290 302Right-handed alpha
Helix 31
AD4
B
316 326Right-handed alpha
Helix 32
AD5
B
335 340Right-handed alpha
Helix 33
AD6
B
341 354Right-handed alpha
Helix 34
AD7
B
371 380Right-handed alpha
Helix 35
AD8
B
392 410Right-handed alpha
Helix 36
AD9
B
411 413Right-handed 310
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There are 8 sheets in PDB entry 6O4N. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 15first strand
Strand 2
A
21 29anti-parallel
Strand 3
A
34 38anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
143 144first strand
Strand 2
A
414 415parallel
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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
146 147first strand
Strand 2
A
384 386parallel
Strand 3
A
358 362parallel
Strand 4
A
331 334parallel
Strand 5
A
306 309parallel
Strand 6
A
279 283parallel
Strand 7
A
240 244parallel
Strand 8
A
166 170anti-parallel
Strand 9
A
149 153anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
251 252first strand
Strand 2
A
257 258anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
6 15first strand
Strand 2
B
21 29anti-parallel
Strand 3
B
34 38anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
143 144first strand
Strand 2
B
414 415parallel
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There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
146 147first strand
Strand 2
B
384 386parallel
Strand 3
B
358 362parallel
Strand 4
B
331 334parallel
Strand 5
B
306 309parallel
Strand 6
B
279 283parallel
Strand 7
B
240 244parallel
Strand 8
B
166 170anti-parallel
Strand 9
B
149 153anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
251 252first strand
Strand 2
B
257 258anti-parallel
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