Analysis of interatomic Contacts of Structural Units in PDB entry:
6O5C


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6O5C entry

There are 2 chains in PDB entry 6O5C (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LEU 215
B
 GLU 6LEU 215
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 18 helices in PDB entry 6O5C. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
4 19Right-handed alpha
Helix 2
AA2
A
23 32Right-handed alpha
Helix 3
AA3
A
34 48Right-handed alpha
Helix 4
AA4
A
62 86Right-handed alpha
Helix 5
AA5
A
92 105Right-handed alpha
Helix 6
AA6
A
106 117Right-handed alpha
Helix 7
AA7
A
143 147Right-handed 310
Helix 8
AA8
A
161 171Right-handed alpha
Helix 9
AA9
A
204 208Right-handed alpha
Helix 10
AB1
B
8 12Right-handed 310
Helix 11
AB2
B
24 31Right-handed alpha
Helix 12
AB3
B
35 40Right-handed alpha
Helix 13
AB4
B
41 46Right-handed alpha
Helix 14
AB5
B
62 88Right-handed alpha
Helix 15
AB6
B
90 105Right-handed alpha
Helix 16
AB7
B
106 117Right-handed alpha
Helix 17
AB8
B
161 171Right-handed alpha
Helix 18
AB9
B
204 208Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 6O5C. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
51 54first strand
Strand 2
A
58 61anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
198 203first strand
Strand 2
A
190 195anti-parallel
Strand 3
A
178 185anti-parallel
Strand 4
A
151 157anti-parallel
Strand 5
A
211 214anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
198 203first strand
Strand 2
B
190 195anti-parallel
Strand 3
B
178 185anti-parallel
Strand 4
B
151 158anti-parallel
Strand 5
B
210 214anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il