Analysis of interatomic Contacts of Structural Units in PDB entry:
6O5E

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6O5E entry

There are 2 chains in PDB entry 6O5E (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 153	ALA 474
B	GLU 154	ALA 474

There are 8 helices in PDB entry 6O5E. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	196	201	Right-handed alpha
Helix 2	AA2	A	243	247	Right-handed alpha
Helix 3	AA3	A	335	339	Right-handed alpha
Helix 4	AA4	A	465	469	Right-handed alpha
Helix 5	AA5	B	196	200	Right-handed alpha
Helix 6	AA6	B	243	247	Right-handed alpha
Helix 7	AA7	B	335	339	Right-handed alpha
Helix 8	AA8	B	465	469	Right-handed alpha

There are 12 sheets in PDB entry 6O5E. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	163	164	first strand
Strand 2	A	171	176	anti-parallel
Strand 3	A	179	184	anti-parallel
Strand 4	A	193	195	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	208	211	first strand
Strand 2	A	219	223	anti-parallel
Strand 3	A	226	231	anti-parallel
Strand 4	A	234	235	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	208	211	first strand
Strand 2	A	219	223	anti-parallel
Strand 3	A	226	231	anti-parallel
Strand 4	A	241	242	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	256	259	first strand
Strand 2	A	270	275	anti-parallel
Strand 3	A	278	283	anti-parallel
Strand 4	A	333	334	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	348	351	first strand
Strand 2	A	435	440	anti-parallel
Strand 3	A	443	448	anti-parallel
Strand 4	A	453	454	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	348	351	first strand
Strand 2	A	435	440	anti-parallel
Strand 3	A	443	448	anti-parallel
Strand 4	A	463	464	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	163	166	first strand
Strand 2	B	172	176	anti-parallel
Strand 3	B	179	183	anti-parallel
Strand 4	B	194	195	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	208	211	first strand
Strand 2	B	218	223	anti-parallel
Strand 3	B	226	231	anti-parallel
Strand 4	B	234	235	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	208	211	first strand
Strand 2	B	218	223	anti-parallel
Strand 3	B	226	231	anti-parallel
Strand 4	B	241	242	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	256	260	first strand
Strand 2	B	270	275	anti-parallel
Strand 3	B	278	283	anti-parallel
Strand 4	B	333	334	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	348	351	first strand
Strand 2	B	435	440	anti-parallel
Strand 3	B	443	448	anti-parallel
Strand 4	B	453	454	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	348	351	first strand
Strand 2	B	435	440	anti-parallel
Strand 3	B	443	448	anti-parallel
Strand 4	B	463	464	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6O5E

Analysis of interatomic Contacts of Structural Units in PDB entry:
6O5E