Analysis of interatomic Contacts of Structural Units in PDB entry:
6O5Y

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6O5Y entry

There are 4 chains in PDB entry 6O5Y (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 36	SER 512
B	LEU 37	SER 512
C	GLY 36	SER 512
D	ASN 39	SER 512

There are 90 helices in PDB entry 6O5Y. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	51	56	Right-handed alpha
Helix 2	AA2	A	58	71	Right-handed alpha
Helix 3	AA3	A	88	97	Right-handed alpha
Helix 4	AA4	A	99	104	Right-handed alpha
Helix 5	AA5	A	109	119	Right-handed 310
Helix 6	AA6	A	128	146	Right-handed alpha
Helix 7	AA7	A	157	180	Right-handed alpha
Helix 8	AA8	A	185	204	Right-handed alpha
Helix 9	AA9	A	212	219	Right-handed alpha
Helix 10	AB1	A	232	237	Right-handed alpha
Helix 11	AB2	A	238	242	Right-handed 310
Helix 12	AB3	A	245	271	Right-handed alpha
Helix 13	AB4	A	280	291	Right-handed alpha
Helix 14	AB5	A	303	336	Right-handed alpha
Helix 15	AB6	A	336	350	Right-handed alpha
Helix 16	AB7	A	358	364	Right-handed 310
Helix 17	AB8	A	365	380	Right-handed alpha
Helix 18	AB9	A	410	416	Right-handed alpha
Helix 19	AC1	A	428	433	Right-handed 310
Helix 20	AC2	A	443	447	Right-handed 310
Helix 21	AC3	A	452	456	Right-handed 310
Helix 22	AC4	A	459	477	Right-handed alpha
Helix 23	AC5	B	51	56	Right-handed alpha
Helix 24	AC6	B	58	70	Right-handed alpha
Helix 25	AC7	B	88	97	Right-handed alpha
Helix 26	AC8	B	99	103	Right-handed 310
Helix 27	AC9	B	110	119	Right-handed 310
Helix 28	AD1	B	128	147	Right-handed alpha
Helix 29	AD2	B	159	180	Right-handed alpha
Helix 30	AD3	B	185	203	Right-handed alpha
Helix 31	AD4	B	211	219	Right-handed alpha
Helix 32	AD5	B	222	229	Right-handed alpha
Helix 33	AD6	B	232	236	Right-handed 310
Helix 34	AD7	B	245	272	Right-handed alpha
Helix 35	AD8	B	280	294	Right-handed alpha
Helix 36	AD9	B	303	309	Right-handed alpha
Helix 37	AE1	B	309	336	Right-handed alpha
Helix 38	AE2	B	336	351	Right-handed alpha
Helix 39	AE3	B	358	364	Right-handed 310
Helix 40	AE4	B	365	380	Right-handed alpha
Helix 41	AE5	B	410	416	Right-handed alpha
Helix 42	AE6	B	428	433	Right-handed 310
Helix 43	AE7	B	440	445	Right-handed alpha
Helix 44	AE8	B	459	478	Right-handed alpha
Helix 45	AE9	C	51	56	Right-handed alpha
Helix 46	AF1	C	58	71	Right-handed alpha
Helix 47	AF2	C	88	97	Right-handed alpha
Helix 48	AF3	C	99	104	Right-handed alpha
Helix 49	AF4	C	109	114	Right-handed alpha
Helix 50	AF5	C	115	119	Right-handed 310
Helix 51	AF6	C	128	146	Right-handed alpha
Helix 52	AF7	C	152	156	Right-handed 310
Helix 53	AF8	C	157	178	Right-handed alpha
Helix 54	AF9	C	185	203	Right-handed alpha
Helix 55	AG1	C	211	216	Right-handed alpha
Helix 56	AG2	C	222	227	Right-handed alpha
Helix 57	AG3	C	232	236	Right-handed 310
Helix 58	AG4	C	245	272	Right-handed alpha
Helix 59	AG5	C	280	291	Right-handed alpha
Helix 60	AG6	C	303	309	Right-handed alpha
Helix 61	AG7	C	309	336	Right-handed alpha
Helix 62	AG8	C	336	350	Right-handed alpha
Helix 63	AG9	C	358	363	Right-handed 310
Helix 64	AH1	C	365	380	Right-handed alpha
Helix 65	AH2	C	410	416	Right-handed alpha
Helix 66	AH3	C	428	433	Right-handed 310
Helix 67	AH4	C	440	445	Right-handed alpha
Helix 68	AH5	C	452	456	Right-handed 310
Helix 69	AH6	C	459	477	Right-handed alpha
Helix 70	AH7	D	51	56	Right-handed alpha
Helix 71	AH8	D	58	71	Right-handed alpha
Helix 72	AH9	D	88	97	Right-handed alpha
Helix 73	AI1	D	98	102	Right-handed 310
Helix 74	AI2	D	109	115	Right-handed alpha
Helix 75	AI3	D	116	119	Right-handed 310
Helix 76	AI4	D	128	147	Right-handed alpha
Helix 77	AI5	D	159	178	Right-handed alpha
Helix 78	AI6	D	185	204	Right-handed alpha
Helix 79	AI7	D	211	219	Right-handed alpha
Helix 80	AI8	D	245	272	Right-handed alpha
Helix 81	AI9	D	280	291	Right-handed alpha
Helix 82	AJ1	D	304	336	Right-handed alpha
Helix 83	AJ2	D	336	350	Right-handed alpha
Helix 84	AJ3	D	358	364	Right-handed 310
Helix 85	AJ4	D	365	379	Right-handed alpha
Helix 86	AJ5	D	410	417	Right-handed alpha
Helix 87	AJ6	D	428	433	Right-handed 310
Helix 88	AJ7	D	440	445	Right-handed alpha
Helix 89	AJ8	D	452	456	Right-handed 310
Helix 90	AJ9	D	459	477	Right-handed alpha

There are 15 sheets in PDB entry 6O5Y. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	73	78	first strand
Strand 2	A	81	86	anti-parallel
Strand 3	A	406	409	parallel
Strand 4	A	388	389	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	394	396	first strand
Strand 2	A	399	401	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	479	481	first strand
Strand 2	A	507	509	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	492	493	first strand
Strand 2	A	499	500	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	73	78	first strand
Strand 2	B	81	86	anti-parallel
Strand 3	B	406	409	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	394	396	first strand
Strand 2	B	399	401	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	479	481	first strand
Strand 2	B	507	509	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	73	78	first strand
Strand 2	C	81	86	anti-parallel
Strand 3	C	406	409	parallel
Strand 4	C	388	389	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	394	396	first strand
Strand 2	C	399	401	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	478	481	first strand
Strand 2	C	507	510	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	492	493	first strand
Strand 2	C	499	500	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	73	77	first strand
Strand 2	D	82	86	anti-parallel
Strand 3	D	406	409	parallel
Strand 4	D	388	389	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	394	396	first strand
Strand 2	D	399	401	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	478	481	first strand
Strand 2	D	507	510	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	492	493	first strand
Strand 2	D	499	500	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6O5Y

Analysis of interatomic Contacts of Structural Units in PDB entry:
6O5Y