Analysis of interatomic Contacts of Structural Units in PDB entry:
6O60


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6O60 entry

There are 4 chains in PDB entry 6O60 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 5LEU 400
B
 LYS 6GLU 328
C
 GLY 9PHE 400
D
 PRO 2CYS 160
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 61 helices in PDB entry 6O60. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
6 26Right-handed alpha
Helix 2
AA2
A
60 77Right-handed alpha
Helix 3
AA3
A
83 98Right-handed alpha
Helix 4
AA4
A
101 114Right-handed alpha
Helix 5
AA5
A
118 133Right-handed alpha
Helix 6
AA6
A
136 150Right-handed alpha
Helix 7
AA7
A
172 191Right-handed alpha
Helix 8
AA8
A
194 208Right-handed alpha
Helix 9
AA9
A
212 230Right-handed alpha
Helix 10
AB1
A
233 249Right-handed alpha
Helix 11
AB2
A
290 306Right-handed alpha
Helix 12
AB3
A
309 324Right-handed alpha
Helix 13
AB4
A
367 380Right-handed alpha
Helix 14
AB5
A
383 398Right-handed alpha
Helix 15
AB6
B
19 30Right-handed alpha
Helix 16
AB7
B
36 43Right-handed alpha
Helix 17
AB8
B
45 60Right-handed alpha
Helix 18
AB9
B
62 66Right-handed 310
Helix 19
AC1
B
67 77Right-handed alpha
Helix 20
AC2
B
94 108Right-handed alpha
Helix 21
AC3
B
110 114Right-handed 310
Helix 22
AC4
B
115 126Right-handed alpha
Helix 23
AC5
B
142 157Right-handed alpha
Helix 24
AC6
B
158 162Right-handed 310
Helix 25
AC7
B
163 173Right-handed alpha
Helix 26
AC8
B
190 204Right-handed alpha
Helix 27
AC9
B
206 210Right-handed 310
Helix 28
AD1
B
211 221Right-handed alpha
Helix 29
AD2
B
238 252Right-handed alpha
Helix 30
AD3
B
254 258Right-handed 310
Helix 31
AD4
B
259 270Right-handed alpha
Helix 32
AD5
B
288 302Right-handed alpha
Helix 33
AD6
B
316 325Right-handed alpha
Helix 34
AD7
C
10 15Right-handed alpha
Helix 35
AD8
C
16 25Right-handed alpha
Helix 36
AD9
C
28 36Right-handed alpha
Helix 37
AE1
C
39 47Right-handed alpha
Helix 38
AE2
C
48 52Right-handed 310
Helix 39
AE3
C
67 76Right-handed alpha
Helix 40
AE4
C
92 103Right-handed alpha
Helix 41
AE5
C
118 129Right-handed alpha
Helix 42
AE6
C
144 155Right-handed alpha
Helix 43
AE7
C
170 181Right-handed alpha
Helix 44
AE8
C
196 207Right-handed alpha
Helix 45
AE9
C
222 233Right-handed alpha
Helix 46
AF1
C
248 259Right-handed alpha
Helix 47
AF2
C
274 285Right-handed alpha
Helix 48
AF3
C
300 311Right-handed alpha
Helix 49
AF4
C
326 335Right-handed alpha
Helix 50
AF5
C
336 342Right-handed alpha
Helix 51
AF6
C
355 362Right-handed alpha
Helix 52
AF7
C
380 391Right-handed alpha
Helix 53
AF8
D
18 22Right-handed alpha
Helix 54
AF9
D
24 34Right-handed alpha
Helix 55
AG1
D
51 64Right-handed alpha
Helix 56
AG2
D
86 93Right-handed alpha
Helix 57
AG3
D
96 111Right-handed alpha
Helix 58
AG4
D
112 128Right-handed alpha
Helix 59
AG5
D
131 139Right-handed alpha
Helix 60
AG6
D
146 154Right-handed alpha
Helix 61
AG7
D
155 159Right-handed 310
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There are 4 sheets in PDB entry 6O60. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 35first strand
Strand 2
A
53 57parallel
Strand 3
A
47 50anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
278 279first strand
Strand 2
B
286 287anti-parallel
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There are 14 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
54 56first strand
Strand 2
C
82 84parallel
Strand 3
C
108 110parallel
Strand 4
C
134 136parallel
Strand 5
C
160 162parallel
Strand 6
C
186 188parallel
Strand 7
C
212 214parallel
Strand 8
C
238 240parallel
Strand 9
C
264 266parallel
Strand 10
C
290 292parallel
Strand 11
C
316 318parallel
Strand 12
C
345 347parallel
Strand 13
C
370 372parallel
Strand 14
C
395 397parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
13 17first strand
Strand 2
D
3 7anti-parallel
Strand 3
D
45 46parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il