Analysis of interatomic Contacts of Structural Units in PDB entry:
6O65

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6O65 entry

There are 5 chains in PDB entry 6O65 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 35	SER 331
B	SER 31	SER 331
C	GLU 36	ALA 333
D	SER 31	SER 331
E	LYS 35	VAL 157

There are 91 helices in PDB entry 6O65. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	102	116	Right-handed alpha
Helix 2	AA2	A	132	140	Right-handed alpha
Helix 3	AA3	A	153	164	Right-handed alpha
Helix 4	AA4	A	164	169	Right-handed alpha
Helix 5	AA5	A	170	173	Right-handed 310
Helix 6	AA6	A	182	190	Right-handed alpha
Helix 7	AA7	A	209	213	Right-handed 310
Helix 8	AA8	A	214	224	Right-handed alpha
Helix 9	AA9	A	241	256	Right-handed alpha
Helix 10	AB1	A	270	272	Right-handed 310
Helix 11	AB2	A	311	318	Right-handed alpha
Helix 12	AB3	A	322	331	Right-handed alpha
Helix 13	AB4	B	103	116	Right-handed alpha
Helix 14	AB5	B	132	140	Right-handed alpha
Helix 15	AB6	B	153	164	Right-handed alpha
Helix 16	AB7	B	168	172	Right-handed 310
Helix 17	AB8	B	182	190	Right-handed alpha
Helix 18	AB9	B	209	213	Right-handed 310
Helix 19	AC1	B	214	224	Right-handed alpha
Helix 20	AC2	B	241	256	Right-handed alpha
Helix 21	AC3	B	270	272	Right-handed 310
Helix 22	AC4	B	311	318	Right-handed alpha
Helix 23	AC5	B	322	331	Right-handed alpha
Helix 24	AC6	C	103	116	Right-handed alpha
Helix 25	AC7	C	132	140	Right-handed alpha
Helix 26	AC8	C	153	164	Right-handed alpha
Helix 27	AC9	C	166	172	Right-handed alpha
Helix 28	AD1	C	182	189	Right-handed alpha
Helix 29	AD2	C	209	213	Right-handed 310
Helix 30	AD3	C	214	224	Right-handed alpha
Helix 31	AD4	C	241	256	Right-handed alpha
Helix 32	AD5	C	270	272	Right-handed 310
Helix 33	AD6	C	311	318	Right-handed alpha
Helix 34	AD7	C	322	330	Right-handed alpha
Helix 35	AD8	D	102	116	Right-handed alpha
Helix 36	AD9	D	132	139	Right-handed alpha
Helix 37	AE1	D	153	164	Right-handed alpha
Helix 38	AE2	D	164	169	Right-handed alpha
Helix 39	AE3	D	170	173	Right-handed 310
Helix 40	AE4	D	182	190	Right-handed alpha
Helix 41	AE5	D	209	213	Right-handed 310
Helix 42	AE6	D	214	224	Right-handed alpha
Helix 43	AE7	D	241	256	Right-handed alpha
Helix 44	AE8	D	270	272	Right-handed 310
Helix 45	AE9	D	311	318	Right-handed alpha
Helix 46	AF1	D	322	330	Right-handed alpha
Helix 47	AF2	E	102	116	Right-handed alpha
Helix 48	AF3	E	132	140	Right-handed alpha
Helix 49	AF4	E	153	164	Right-handed alpha
Helix 50	AF5	E	164	169	Right-handed alpha
Helix 51	AF6	E	170	173	Right-handed 310
Helix 52	AF7	E	182	190	Right-handed alpha
Helix 53	AF8	E	209	213	Right-handed 310
Helix 54	AF9	E	214	224	Right-handed alpha
Helix 55	AG1	E	241	256	Right-handed alpha
Helix 56	AG2	E	311	318	Right-handed alpha
Helix 57	AG3	E	322	330	Right-handed alpha
Helix 58	AG4	F	102	116	Right-handed alpha
Helix 59	AG5	F	132	139	Right-handed alpha
Helix 60	AG6	F	153	164	Right-handed alpha
Helix 61	AG7	F	164	169	Right-handed alpha
Helix 62	AG8	F	170	173	Right-handed 310
Helix 63	AG9	F	182	190	Right-handed alpha
Helix 64	AH1	F	209	213	Right-handed 310
Helix 65	AH2	F	214	224	Right-handed alpha
Helix 66	AH3	F	241	256	Right-handed alpha
Helix 67	AH4	F	270	272	Right-handed 310
Helix 68	AH5	F	311	318	Right-handed alpha
Helix 69	AH6	F	322	330	Right-handed alpha
Helix 70	AH7	G	102	116	Right-handed alpha
Helix 71	AH8	G	132	139	Right-handed alpha
Helix 72	AH9	G	153	164	Right-handed alpha
Helix 73	AI1	G	166	172	Right-handed alpha
Helix 74	AI2	G	182	189	Right-handed alpha
Helix 75	AI3	G	209	213	Right-handed 310
Helix 76	AI4	G	214	224	Right-handed alpha
Helix 77	AI5	G	241	256	Right-handed alpha
Helix 78	AI6	G	270	272	Right-handed 310
Helix 79	AI7	G	311	318	Right-handed alpha
Helix 80	AI8	G	322	330	Right-handed alpha
Helix 81	AI9	H	102	116	Right-handed alpha
Helix 82	AJ1	H	132	139	Right-handed alpha
Helix 83	AJ2	H	153	164	Right-handed alpha
Helix 84	AJ3	H	167	173	Right-handed 310
Helix 85	AJ4	H	182	190	Right-handed alpha
Helix 86	AJ5	H	209	213	Right-handed 310
Helix 87	AJ6	H	214	224	Right-handed alpha
Helix 88	AJ7	H	241	256	Right-handed alpha
Helix 89	AJ8	H	270	272	Right-handed 310
Helix 90	AJ9	H	311	318	Right-handed alpha
Helix 91	AK1	H	322	331	Right-handed alpha

There are 16 sheets in PDB entry 6O65. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	47	49	first strand
Strand 2	A	58	72	anti-parallel
Strand 3	B	58	72	anti-parallel
Strand 4	B	47	49	anti-parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	95	99	first strand
Strand 2	A	88	92	anti-parallel
Strand 3	A	77	83	anti-parallel
Strand 4	A	58	72	anti-parallel
Strand 5	B	58	72	anti-parallel
Strand 6	B	77	83	anti-parallel
Strand 7	B	88	92	anti-parallel
Strand 8	B	95	99	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	176	180	first strand
Strand 2	A	146	151	parallel
Strand 3	A	123	128	parallel
Strand 4	A	195	201	parallel
Strand 5	A	225	234	parallel
Strand 6	A	274	281	anti-parallel
Strand 7	A	260	266	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	176	180	first strand
Strand 2	B	146	151	parallel
Strand 3	B	123	128	parallel
Strand 4	B	195	201	parallel
Strand 5	B	225	234	parallel
Strand 6	B	274	281	anti-parallel
Strand 7	B	260	266	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	47	49	first strand
Strand 2	C	58	72	anti-parallel
Strand 3	D	58	72	anti-parallel
Strand 4	D	47	50	anti-parallel

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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	95	99	first strand
Strand 2	C	88	92	anti-parallel
Strand 3	C	77	83	anti-parallel
Strand 4	C	58	72	anti-parallel
Strand 5	D	58	72	anti-parallel
Strand 6	D	77	83	anti-parallel
Strand 7	D	88	92	anti-parallel
Strand 8	D	95	99	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	176	180	first strand
Strand 2	C	146	151	parallel
Strand 3	C	123	128	parallel
Strand 4	C	195	201	parallel
Strand 5	C	225	234	parallel
Strand 6	C	274	281	anti-parallel
Strand 7	C	260	266	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	176	180	first strand
Strand 2	D	146	151	parallel
Strand 3	D	123	128	parallel
Strand 4	D	195	201	parallel
Strand 5	D	225	234	parallel
Strand 6	D	274	281	anti-parallel
Strand 7	D	260	266	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	47	49	first strand
Strand 2	E	58	72	anti-parallel
Strand 3	F	58	72	anti-parallel
Strand 4	F	47	50	anti-parallel

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There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	95	99	first strand
Strand 2	E	88	92	anti-parallel
Strand 3	E	77	83	anti-parallel
Strand 4	E	58	72	anti-parallel
Strand 5	F	58	72	anti-parallel
Strand 6	F	77	83	anti-parallel
Strand 7	F	88	92	anti-parallel
Strand 8	F	95	99	anti-parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	176	180	first strand
Strand 2	E	146	151	parallel
Strand 3	E	123	128	parallel
Strand 4	E	195	201	parallel
Strand 5	E	225	234	parallel
Strand 6	E	274	281	anti-parallel
Strand 7	E	260	266	anti-parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	176	180	first strand
Strand 2	F	146	151	parallel
Strand 3	F	123	128	parallel
Strand 4	F	195	201	parallel
Strand 5	F	225	234	parallel
Strand 6	F	274	281	anti-parallel
Strand 7	F	260	266	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	47	49	first strand
Strand 2	G	58	72	anti-parallel
Strand 3	H	58	72	anti-parallel
Strand 4	H	47	50	anti-parallel

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There are 8 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	95	99	first strand
Strand 2	G	88	92	anti-parallel
Strand 3	G	77	83	anti-parallel
Strand 4	G	58	72	anti-parallel
Strand 5	H	58	72	anti-parallel
Strand 6	H	77	83	anti-parallel
Strand 7	H	88	92	anti-parallel
Strand 8	H	95	99	anti-parallel

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There are 7 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	176	180	first strand
Strand 2	G	146	151	parallel
Strand 3	G	123	128	parallel
Strand 4	G	195	201	parallel
Strand 5	G	225	234	parallel
Strand 6	G	274	281	anti-parallel
Strand 7	G	260	266	anti-parallel

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There are 7 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	176	180	first strand
Strand 2	H	146	151	parallel
Strand 3	H	123	128	parallel
Strand 4	H	195	201	parallel
Strand 5	H	225	234	parallel
Strand 6	H	274	281	anti-parallel
Strand 7	H	260	266	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6O65

Analysis of interatomic Contacts of Structural Units in PDB entry:
6O65