Analysis of interatomic Contacts of Structural Units in PDB entry:
6O6M

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6O6M entry

There are 4 chains in PDB entry 6O6M (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 17	MET 433
B	ASP 18	MET 433
C	ASP 18	MET 433
D	SER 17	MET 433

There are 69 helices in PDB entry 6O6M. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	18	38	Right-handed alpha
Helix 2	AA2	A	42	46	Right-handed 310
Helix 3	AA3	A	55	71	Right-handed alpha
Helix 4	AA4	A	71	76	Right-handed alpha
Helix 5	AA5	A	85	91	Right-handed alpha
Helix 6	AA6	A	102	109	Right-handed 310
Helix 7	AA7	A	113	135	Right-handed alpha
Helix 8	AA8	A	136	172	Right-handed alpha
Helix 9	AA9	A	217	221	Right-handed 310
Helix 10	AB1	A	239	249	Right-handed alpha
Helix 11	AB2	A	250	258	Right-handed 310
Helix 12	AB3	A	259	270	Right-handed alpha
Helix 13	AB4	A	306	317	Right-handed alpha
Helix 14	AB5	A	323	333	Right-handed alpha
Helix 15	AB6	A	340	344	Right-handed 310
Helix 16	AB7	A	380	390	Right-handed 310
Helix 17	AB8	A	404	408	Right-handed 310
Helix 18	AB9	B	19	38	Right-handed alpha
Helix 19	AC1	B	41	46	Right-handed 310
Helix 20	AC2	B	55	71	Right-handed alpha
Helix 21	AC3	B	71	76	Right-handed alpha
Helix 22	AC4	B	85	91	Right-handed alpha
Helix 23	AC5	B	102	109	Right-handed 310
Helix 24	AC6	B	113	135	Right-handed alpha
Helix 25	AC7	B	136	171	Right-handed alpha
Helix 26	AC8	B	217	221	Right-handed 310
Helix 27	AC9	B	239	249	Right-handed alpha
Helix 28	AD1	B	250	258	Right-handed 310
Helix 29	AD2	B	259	270	Right-handed alpha
Helix 30	AD3	B	306	317	Right-handed alpha
Helix 31	AD4	B	323	332	Right-handed alpha
Helix 32	AD5	B	340	344	Right-handed 310
Helix 33	AD6	B	380	385	Right-handed 310
Helix 34	AD7	B	386	390	Right-handed 310
Helix 35	AD8	B	404	408	Right-handed 310
Helix 36	AD9	C	19	38	Right-handed alpha
Helix 37	AE1	C	42	46	Right-handed 310
Helix 38	AE2	C	55	71	Right-handed alpha
Helix 39	AE3	C	71	76	Right-handed alpha
Helix 40	AE4	C	85	91	Right-handed alpha
Helix 41	AE5	C	102	109	Right-handed 310
Helix 42	AE6	C	113	135	Right-handed alpha
Helix 43	AE7	C	136	171	Right-handed alpha
Helix 44	AE8	C	217	221	Right-handed 310
Helix 45	AE9	C	239	249	Right-handed alpha
Helix 46	AF1	C	250	258	Right-handed 310
Helix 47	AF2	C	259	270	Right-handed alpha
Helix 48	AF3	C	306	317	Right-handed alpha
Helix 49	AF4	C	323	333	Right-handed alpha
Helix 50	AF5	C	340	344	Right-handed 310
Helix 51	AF6	C	380	385	Right-handed 310
Helix 52	AF7	C	386	390	Right-handed 310
Helix 53	AF8	D	18	38	Right-handed alpha
Helix 54	AF9	D	41	46	Right-handed 310
Helix 55	AG1	D	55	71	Right-handed alpha
Helix 56	AG2	D	71	76	Right-handed alpha
Helix 57	AG3	D	85	91	Right-handed alpha
Helix 58	AG4	D	102	109	Right-handed 310
Helix 59	AG5	D	113	135	Right-handed alpha
Helix 60	AG6	D	136	171	Right-handed alpha
Helix 61	AG7	D	217	221	Right-handed 310
Helix 62	AG8	D	239	249	Right-handed alpha
Helix 63	AG9	D	250	258	Right-handed 310
Helix 64	AH1	D	259	270	Right-handed alpha
Helix 65	AH2	D	306	317	Right-handed alpha
Helix 66	AH3	D	323	332	Right-handed alpha
Helix 67	AH4	D	340	344	Right-handed 310
Helix 68	AH5	D	380	390	Right-handed 310
Helix 69	AH6	D	404	408	Right-handed 310

There are 19 sheets in PDB entry 6O6M. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	198	201	first strand
Strand 2	A	231	234	anti-parallel
Strand 3	A	430	432	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	204	208	first strand
Strand 2	A	224	228	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	277	279	first strand
Strand 2	A	285	289	anti-parallel
Strand 3	A	292	295	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	338	339	first strand
Strand 2	A	358	359	parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	414	416	first strand
Strand 2	A	394	397	anti-parallel
Strand 3	A	362	368	anti-parallel
Strand 4	A	425	426	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	198	201	first strand
Strand 2	B	231	234	anti-parallel
Strand 3	B	430	432	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	204	208	first strand
Strand 2	B	224	228	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	277	279	first strand
Strand 2	B	285	289	anti-parallel
Strand 3	B	292	295	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	338	339	first strand
Strand 2	B	358	359	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	414	416	first strand
Strand 2	B	394	397	anti-parallel
Strand 3	B	362	368	anti-parallel
Strand 4	B	425	426	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	198	201	first strand
Strand 2	C	231	234	anti-parallel
Strand 3	C	430	432	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	204	208	first strand
Strand 2	C	224	228	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	277	279	first strand
Strand 2	C	285	289	anti-parallel
Strand 3	C	292	295	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	414	416	first strand
Strand 2	C	394	397	anti-parallel
Strand 3	C	362	368	anti-parallel
Strand 4	C	425	426	parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	198	201	first strand
Strand 2	D	231	234	anti-parallel
Strand 3	D	430	432	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	204	208	first strand
Strand 2	D	224	228	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	277	279	first strand
Strand 2	D	285	289	anti-parallel
Strand 3	D	292	295	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	338	339	first strand
Strand 2	D	358	359	parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	414	416	first strand
Strand 2	D	394	397	anti-parallel
Strand 3	D	362	368	anti-parallel
Strand 4	D	425	426	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6O6M

Analysis of interatomic Contacts of Structural Units in PDB entry:
6O6M