Analysis of interatomic Contacts of Structural Units in PDB entry:
6O6Q


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6O6Q entry

There are 2 chains in PDB entry 6O6Q (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 4ALA 333
B
 ARG 5ALA 333
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 6O6Q. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
19 23Right-handed 310
Helix 2
AA2
A
24 29Right-handed alpha
Helix 3
AA3
A
30 33Right-handed 310
Helix 4
AA4
A
79 92Right-handed alpha
Helix 5
AA5
A
124 129Right-handed alpha
Helix 6
AA6
A
130 132Right-handed 310
Helix 7
AA7
A
133 154Right-handed alpha
Helix 8
AA8
A
162 164Right-handed 310
Helix 9
AA9
A
179 183Right-handed 310
Helix 10
AB1
A
198 202Right-handed 310
Helix 11
AB2
A
203 208Right-handed alpha
Helix 12
AB3
A
215 232Right-handed alpha
Helix 13
AB4
A
241 254Right-handed alpha
Helix 14
AB5
A
255 266Right-handed alpha
Helix 15
AB6
A
270 274Right-handed 310
Helix 16
AB7
A
283 288Right-handed 310
Helix 17
AB8
A
297 308Right-handed alpha
Helix 18
AB9
A
317 323Right-handed alpha
Helix 19
AC1
A
324 328Right-handed 310
Helix 20
AC2
B
19 23Right-handed 310
Helix 21
AC3
B
24 29Right-handed alpha
Helix 22
AC4
B
78 92Right-handed alpha
Helix 23
AC5
B
124 129Right-handed alpha
Helix 24
AC6
B
130 132Right-handed 310
Helix 25
AC7
B
133 154Right-handed alpha
Helix 26
AC8
B
162 164Right-handed 310
Helix 27
AC9
B
179 183Right-handed 310
Helix 28
AD1
B
198 202Right-handed 310
Helix 29
AD2
B
203 208Right-handed alpha
Helix 30
AD3
B
215 232Right-handed alpha
Helix 31
AD4
B
241 254Right-handed alpha
Helix 32
AD5
B
254 265Right-handed alpha
Helix 33
AD6
B
270 276Right-handed 310
Helix 34
AD7
B
283 288Right-handed 310
Helix 35
AD8
B
297 306Right-handed alpha
Helix 36
AD9
B
311 315Right-handed 310
Helix 37
AE1
B
317 323Right-handed alpha
Helix 38
AE2
B
324 328Right-handed 310
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There are 6 sheets in PDB entry 6O6Q. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
43 51first strand
Strand 2
A
55 62anti-parallel
Strand 3
A
68 74anti-parallel
Strand 4
A
114 118anti-parallel
Strand 5
A
101 105anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
156 157first strand
Strand 2
A
184 185anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
166 169first strand
Strand 2
A
174 177anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
43 50first strand
Strand 2
B
55 62anti-parallel
Strand 3
B
68 74anti-parallel
Strand 4
B
114 118anti-parallel
Strand 5
B
101 105anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
156 157first strand
Strand 2
B
184 185anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
166 169first strand
Strand 2
B
174 177anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il