Analysis of interatomic Contacts of Structural Units in PDB entry:
6O6Y


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6O6Y entry

There are 2 chains in PDB entry 6O6Y (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1HIS 433
B
 MET 1SER 432
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 6O6Y. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
10 14Right-handed 310
Helix 2
AA2
A
31 40Right-handed alpha
Helix 3
AA3
A
51 53Right-handed 310
Helix 4
AA4
A
58 77Right-handed alpha
Helix 5
AA5
A
104 116Right-handed alpha
Helix 6
AA6
A
134 153Right-handed alpha
Helix 7
AA7
A
208 219Right-handed alpha
Helix 8
AA8
A
219 242Right-handed alpha
Helix 9
AA9
A
243 250Right-handed alpha
Helix 10
AB1
A
253 271Right-handed alpha
Helix 11
AB2
A
288 305Right-handed alpha
Helix 12
AB3
A
306 308Right-handed 310
Helix 13
AB4
A
315 326Right-handed alpha
Helix 14
AB5
A
327 351Right-handed alpha
Helix 15
AB6
A
360 365Right-handed alpha
Helix 16
AB7
A
374 381Right-handed alpha
Helix 17
AB8
A
400 408Right-handed alpha
Helix 18
AB9
A
414 433Right-handed alpha
Helix 19
AC1
B
10 14Right-handed 310
Helix 20
AC2
B
31 40Right-handed alpha
Helix 21
AC3
B
51 53Right-handed 310
Helix 22
AC4
B
58 77Right-handed alpha
Helix 23
AC5
B
104 115Right-handed alpha
Helix 24
AC6
B
134 153Right-handed alpha
Helix 25
AC7
B
208 219Right-handed alpha
Helix 26
AC8
B
219 242Right-handed alpha
Helix 27
AC9
B
243 250Right-handed alpha
Helix 28
AD1
B
253 271Right-handed alpha
Helix 29
AD2
B
288 305Right-handed alpha
Helix 30
AD3
B
306 308Right-handed 310
Helix 31
AD4
B
314 326Right-handed alpha
Helix 32
AD5
B
327 351Right-handed alpha
Helix 33
AD6
B
360 365Right-handed alpha
Helix 34
AD7
B
374 381Right-handed alpha
Helix 35
AD8
B
400 408Right-handed alpha
Helix 36
AD9
B
414 432Right-handed alpha
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There are 8 sheets in PDB entry 6O6Y. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
24 28first strand
Strand 2
A
17 21anti-parallel
Strand 3
A
176 185parallel
Strand 4
A
158 165anti-parallel
Strand 5
A
124 132parallel
Strand 6
A
2 8parallel
Strand 7
A
43 49parallel
Strand 8
A
83 88parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
92 93first strand
Strand 2
A
98 100anti-parallel
Strand 3
A
280 283parallel
Strand 4
A
272 275anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
202 204first strand
Strand 2
A
285 287anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
313 314first strand
Strand 2
A
409 413anti-parallel
Strand 3
A
389 393anti-parallel
Strand 4
A
358 359anti-parallel
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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
24 28first strand
Strand 2
B
17 21anti-parallel
Strand 3
B
176 185parallel
Strand 4
B
158 165anti-parallel
Strand 5
B
124 132parallel
Strand 6
B
2 8parallel
Strand 7
B
43 49parallel
Strand 8
B
83 88parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
92 93first strand
Strand 2
B
98 100anti-parallel
Strand 3
B
280 283parallel
Strand 4
B
272 275anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
202 204first strand
Strand 2
B
285 287anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
358 359first strand
Strand 2
B
389 393anti-parallel
Strand 3
B
409 413anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il