Analysis of interatomic Contacts of Structural Units in PDB entry:
6O78


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6O78 entry

There are 3 chains in PDB entry 6O78 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ARG 776
B
 PRO 2GLY 287
E
 A 2 A 3
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 6O78. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 12Right-handed alpha
Helix 2
AA2
A
17 22Right-handed alpha
Helix 3
AA3
A
29 44Right-handed alpha
Helix 4
AA4
A
49 54Right-handed alpha
Helix 5
AA5
A
55 58Right-handed 310
Helix 6
AA6
A
68 78Right-handed alpha
Helix 7
AA7
A
86 104Right-handed alpha
Helix 8
AA8
A
150 168Right-handed alpha
Helix 9
AA9
A
171 184Right-handed alpha
Helix 10
AB1
A
197 215Right-handed alpha
Helix 11
AB2
A
242 248Right-handed alpha
Helix 12
AB3
A
256 281Right-handed alpha
Helix 13
AB4
A
284 286Right-handed 310
Helix 14
AB5
A
303 326Right-handed alpha
Helix 15
AB6
A
339 344Right-handed 310
Helix 16
AB7
A
351 367Right-handed alpha
Helix 17
AB8
A
374 379Right-handed 310
Helix 18
AB9
A
501 508Right-handed alpha
Helix 19
AC1
A
524 531Right-handed alpha
Helix 20
AC2
A
534 552Right-handed alpha
Helix 21
AC3
A
552 559Right-handed alpha
Helix 22
AC4
A
561 566Right-handed alpha
Helix 23
AC5
A
596 614Right-handed alpha
Helix 24
AC6
A
632 650Right-handed alpha
Helix 25
AC7
A
674 688Right-handed alpha
Helix 26
AC8
A
697 700Right-handed 310
Helix 27
AC9
A
703 719Right-handed alpha
Helix 28
AD1
A
723 733Right-handed alpha
Helix 29
AD2
A
749 755Right-handed alpha
Helix 30
AD3
A
759 763Right-handed 310
Helix 31
AD4
A
764 775Right-handed alpha
Helix 32
AD5
B
20 37Right-handed alpha
Helix 33
AD6
B
38 50Right-handed alpha
Helix 34
AD7
B
70 77Right-handed 310
Helix 35
AD8
B
87 99Right-handed alpha
Helix 36
AD9
B
104 111Right-handed alpha
Helix 37
AE1
B
164 171Right-handed alpha
Helix 38
AE2
B
171 181Right-handed alpha
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There are 10 sheets in PDB entry 6O78. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
288 292first strand
Strand 2
A
295 301anti-parallel
Strand 3
A
233 241anti-parallel
Strand 4
A
330 338anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
444 445first strand
Strand 2
A
450 455anti-parallel
Strand 3
A
429 435anti-parallel
Strand 4
A
464 468anti-parallel
Strand 5
A
481 485parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
580 586first strand
Strand 2
A
589 595anti-parallel
Strand 3
A
515 522anti-parallel
Strand 4
A
620 627anti-parallel
Strand 5
A
654 656parallel
Strand 6
A
672 673anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
689 691first strand
Strand 2
A
694 695anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
53 54first strand
Strand 2
B
155 162anti-parallel
Strand 3
B
58 61anti-parallel
Strand 4
B
64 68anti-parallel
Strand 5
B
101 103anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
53 54first strand
Strand 2
B
155 162anti-parallel
Strand 3
B
3 10anti-parallel
Strand 4
B
196 203anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
124 129first strand
Strand 2
B
146 151anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
252 253first strand
Strand 2
B
212 214anti-parallel
Strand 3
B
279 281anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
229 231first strand
Strand 2
B
245 247anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
261 263first strand
Strand 2
B
271 273anti-parallel
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